Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SCAZ3_RS12155 Genome accession   NZ_AIDX01000001
Coordinates   387451..387873 (-) Length   140 a.a.
NCBI ID   WP_003044691.1    Uniprot ID   -
Organism   Streptococcus canis FSL Z3-227     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 382451..392873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCAZ3_RS01740 (SCAZ3_08720) - 383460..383759 (-) 300 WP_000129105.1 hypothetical protein -
  SCAZ3_RS01745 (SCAZ3_08725) - 384142..384339 (-) 198 WP_000208121.1 helix-turn-helix transcriptional regulator -
  SCAZ3_RS01750 (SCAZ3_08730) - 384336..384521 (-) 186 WP_000938679.1 hypothetical protein -
  SCAZ3_RS01755 (SCAZ3_08735) - 384523..385548 (-) 1026 WP_000822468.1 replication initiator protein A -
  SCAZ3_RS11925 (SCAZ3_08740) - 385550..385714 (-) 165 WP_000166480.1 hypothetical protein -
  SCAZ3_RS01760 (SCAZ3_08745) - 385821..386264 (-) 444 WP_000447421.1 hypothetical protein -
  SCAZ3_RS01765 (SCAZ3_08760) - 386530..386787 (-) 258 WP_000191926.1 DUF3850 domain-containing protein -
  SCAZ3_RS01770 (SCAZ3_08765) - 386971..387342 (-) 372 WP_001282474.1 hypothetical protein -
  SCAZ3_RS12155 (SCAZ3_08770) comFC/cflB 387451..387873 (-) 423 WP_003044691.1 ComF family protein Machinery gene
  SCAZ3_RS01780 (SCAZ3_08775) comFA/cflA 388088..389413 (-) 1326 WP_003044694.1 DEAD/DEAH box helicase Machinery gene
  SCAZ3_RS01785 (SCAZ3_08780) - 389469..390101 (+) 633 WP_003044697.1 YigZ family protein -
  SCAZ3_RS01790 (SCAZ3_08785) cysK 390219..391154 (+) 936 WP_003044700.1 cysteine synthase A -
  SCAZ3_RS01795 (SCAZ3_08790) - 391321..391680 (-) 360 WP_003044703.1 S1 RNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 16378.81 Da        Isoelectric Point: 9.8594

>NTDB_id=54384 SCAZ3_RS12155 WP_003044691.1 387451..387873(-) (comFC/cflB) [Streptococcus canis FSL Z3-227]
MKAYFRQYKFQGDYLLRNVFAQELAEIIYQNYQGYVPVPVPISDKRYQERNFNQVSAILEAGKVRYHQIFEKHDDSRQSS
KTKKERLLTKNSYHLLEGVEIPPKILIVDDIYTTGSTIMALKKQLLQFGNSDIKSLSIAR

Nucleotide


Download         Length: 423 bp        

>NTDB_id=54384 SCAZ3_RS12155 WP_003044691.1 387451..387873(-) (comFC/cflB) [Streptococcus canis FSL Z3-227]
ATGAAAGCCTATTTCAGACAATATAAATTCCAAGGAGACTATTTATTAAGGAATGTCTTTGCTCAGGAATTAGCAGAAAT
CATTTATCAGAACTATCAAGGATATGTCCCTGTCCCAGTACCTATAAGCGACAAACGTTACCAAGAACGGAATTTTAATC
AGGTGAGCGCTATACTTGAAGCTGGTAAAGTTCGTTACCATCAAATTTTTGAAAAACATGATGATAGCCGTCAATCTTCA
AAGACGAAAAAGGAGCGCTTGTTGACTAAAAATTCTTATCATTTACTTGAAGGAGTCGAAATTCCCCCTAAAATCCTCAT
TGTTGATGATATTTATACCACTGGTAGTACCATTATGGCTTTGAAAAAGCAGTTACTACAATTTGGAAATAGTGACATCA
AAAGTTTGTCGATTGCACGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

45.714

100

0.457
  comFC/cflB Streptococcus mitis NCTC 12261

45.714

100

0.457
  comFC/cflB Streptococcus pneumoniae Rx1

45.714

100

0.457
  comFC/cflB Streptococcus pneumoniae D39

45.714

100

0.457
  comFC/cflB Streptococcus pneumoniae R6

45.714

100

0.457
  comFC/cflB Streptococcus pneumoniae TIGR4

45.714

100

0.457
  comFC Lactococcus lactis subsp. cremoris KW2

43.972

100

0.443

Multiple sequence alignment