Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SDSE_RS12360 Genome accession   NC_019042
Coordinates   332807..334777 (+) Length   656 a.a.
NCBI ID   WP_003057820.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis AC-2713     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 327807..339777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDSE_RS12340 (S_dysgal_equisimilis_AC2713_386) sufU 327850..328326 (+) 477 WP_003062583.1 Fe-S cluster assembly sulfur transfer protein SufU -
  SDSE_RS12345 (S_dysgal_equisimilis_AC2713_387) sufB 328319..329737 (+) 1419 WP_003054855.1 Fe-S cluster assembly protein SufB -
  SDSE_RS12350 (S_dysgal_equisimilis_AC2713_388) - 329913..331094 (-) 1182 WP_012766577.1 serine hydrolase -
  SDSE_RS12355 (S_dysgal_equisimilis_AC2713_389) pbp3 331238..332476 (-) 1239 WP_015057327.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  SDSE_RS12360 (S_dysgal_equisimilis_AC2713_390) amiA 332807..334777 (+) 1971 WP_003057820.1 peptide ABC transporter substrate-binding protein Regulator
  SDSE_RS12365 (S_dysgal_equisimilis_AC2713_391) amiC 334843..336345 (+) 1503 WP_003057826.1 ABC transporter permease Regulator
  SDSE_RS12370 (S_dysgal_equisimilis_AC2713_392) amiD 336345..337271 (+) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  SDSE_RS12375 (S_dysgal_equisimilis_AC2713_393) amiE 337280..338350 (+) 1071 WP_003057822.1 ABC transporter ATP-binding protein Regulator
  SDSE_RS12380 (S_dysgal_equisimilis_AC2713_394) amiF 338343..339266 (+) 924 WP_003057816.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72014.38 Da        Isoelectric Point: 4.9885

>NTDB_id=54287 SDSE_RS12360 WP_003057820.1 332807..334777(+) (amiA) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
MKKSRWLATLGVAVLSVSVLAACGGKNASGGSDATKAYKYVFVNDPKSLDYILTNGGGTTDVITQMVDGLLENDEYGNLV
PSLAKDWKVSKDGLTYTYTLRDGVSWYTADGEEYAPVTAEDFVTGLKHAVDDKSDALYVVEDSIKNLKAYQNGEVDFKEV
GVKALDDKTVQYTLNKPESYWNSKTTYSVLFPVNAKFLKSKGKDFGTTDPSSILVNGAYFLSAFTSKSSMEFHKNENYWD
AKNVGIESVKLTYSDGSDPGSFYKNFDKGEFSVARLYPNDPTYKSAKKNYADNITYGMLTGDIRHLTWNLNRTSFKNTKK
DLAQQDAGKKALNNKDFRQAIQFAFDRASFQAQTAGQDAKTKALRNMLVPPTFVTIGENDFGSEVEKDLATMGDEWKDVN
LKDAQDGFYNPEKAKAEFAKAKEALTAEGVTFPVQLDYPVDQANAATVQEAQSFKQSVEASLGKENVIVNVLETETSTHE
AQGFYAETPEQQDYDIISSWWGPDYQDPRTYLDIMSPVGGGSVIQKLGIKAGQNQDVVAAAGLDTYQTLLDEAAAITDDN
DARYKAYAKAQAYLTDSAVDIPVVALGGTPRVSKAIPFSGGFSWAGAKGPLAYKGMKLQDKPVTAKQYEKAKEKWLKAKA
KSNADYAEKLADHVEK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=54287 SDSE_RS12360 WP_003057820.1 332807..334777(+) (amiA) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
ATGAAGAAAAGTAGATGGTTAGCAACTCTAGGTGTTGCGGTATTATCAGTATCCGTTTTAGCAGCTTGTGGTGGCAAAAA
TGCCTCAGGCGGTTCAGATGCAACTAAAGCTTACAAGTATGTGTTTGTTAACGATCCAAAATCGTTGGATTACATTTTAA
CAAATGGTGGCGGAACGACTGATGTGATAACACAAATGGTTGATGGTCTTTTGGAAAACGATGAGTATGGTAATTTAGTA
CCATCACTTGCTAAAGATTGGAAGGTTTCAAAAGACGGTCTGACATATACTTATACTCTTCGCGATGGTGTCTCTTGGTA
CACGGCTGATGGTGAAGAATACGCACCTGTAACAGCAGAAGATTTTGTGACTGGTTTGAAGCACGCGGTTGACGATAAAT
CAGATGCTCTTTACGTTGTTGAAGATTCAATAAAAAACTTAAAGGCTTACCAAAATGGTGAAGTAGATTTTAAAGAAGTT
GGTGTCAAAGCCCTTGACGATAAAACTGTTCAGTATACTTTGAACAAGCCTGAAAGCTACTGGAATTCAAAAACAACTTA
TAGTGTGCTTTTCCCAGTTAATGCGAAATTTTTGAAGTCAAAAGGTAAAGATTTTGGTACAACCGATCCATCATCAATCC
TTGTTAATGGTGCTTACTTCTTGAGCGCCTTCACCTCAAAATCATCTATGGAATTCCATAAAAATGAAAACTACTGGGAT
GCTAAGAATGTTGGGATAGAATCTGTTAAATTGACTTACTCAGATGGTTCAGATCCAGGTTCTTTCTACAAGAACTTTGA
CAAGGGTGAGTTCAGCGTTGCACGACTTTACCCAAATGACCCTACCTACAAATCAGCTAAGAAAAACTATGCTGATAACA
TTACTTACGGAATGTTGACTGGTGATATCCGTCATTTAACATGGAACTTGAACCGTACTTCTTTCAAAAATACTAAGAAA
GACCTTGCACAACAAGATGCCGGTAAGAAAGCTCTTAACAACAAGGACTTCCGTCAAGCTATCCAGTTTGCTTTTGACCG
TGCATCATTCCAAGCACAAACTGCAGGTCAGGATGCCAAAACAAAAGCCTTACGTAACATGCTTGTGCCACCAACTTTTG
TGACCATCGGAGAAAATGACTTTGGTTCAGAAGTTGAAAAAGACCTTGCTACCATGGGTGATGAATGGAAAGATGTTAAT
TTAAAAGATGCTCAAGATGGATTTTATAATCCTGAAAAAGCAAAAGCTGAGTTTGCAAAAGCCAAAGAAGCTTTGACAGC
TGAAGGTGTAACCTTCCCAGTTCAATTAGATTATCCTGTTGACCAAGCCAACGCAGCAACTGTTCAAGAGGCTCAATCCT
TTAAACAATCTGTTGAAGCATCACTTGGTAAAGAAAATGTCATTGTCAATGTTCTTGAAACAGAAACATCAACTCACGAA
GCCCAAGGCTTCTATGCTGAGACCCCAGAACAACAAGACTACGATATCATTTCATCATGGTGGGGACCAGACTACCAAGA
CCCACGTACCTACCTTGACATCATGAGTCCAGTAGGTGGTGGATCTGTTATCCAAAAACTTGGAATCAAAGCAGGTCAAA
ATCAGGATGTTGTGGCAGCTGCAGGCCTTGATACCTACCAAACTCTTCTTGATGAAGCAGCAGCAATTACAGACGATAAC
GATGCTCGTTACAAAGCTTATGCAAAAGCACAAGCCTACCTTACTGATAGTGCTGTAGATATTCCGGTTGTGGCCTTGGG
TGGTACTCCTCGTGTTTCTAAAGCTATTCCATTTAGCGGCGGCTTCTCTTGGGCAGGTGCTAAAGGACCTCTAGCATATA
AAGGAATGAAACTTCAAGACAAACCTGTTACGGCAAAACAATACGAAAAAGCAAAAGAAAAATGGTTGAAAGCAAAGGCT
AAATCAAACGCAGACTATGCTGAGAAATTAGCTGATCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

50.832

100

0.512
  amiA3 Streptococcus thermophilus LMG 18311

49.849

100

0.503
  amiA3 Streptococcus thermophilus LMD-9

49.547

100

0.5

Multiple sequence alignment