Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SCAZ3_RS00890 Genome accession   NZ_AIDX01000001
Coordinates   200863..201459 (-) Length   198 a.a.
NCBI ID   WP_003044231.1    Uniprot ID   -
Organism   Streptococcus canis FSL Z3-227     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 195863..206459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCAZ3_RS00875 (SCAZ3_07865) - 197281..197976 (-) 696 WP_003044223.1 TIGR02206 family membrane protein -
  SCAZ3_RS00880 (SCAZ3_07870) - 198063..199448 (-) 1386 WP_003044224.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  SCAZ3_RS00885 (SCAZ3_07875) - 199647..200693 (-) 1047 WP_003044228.1 D-alanine--D-alanine ligase -
  SCAZ3_RS00890 (SCAZ3_07880) recR 200863..201459 (-) 597 WP_003044231.1 recombination mediator RecR Machinery gene
  SCAZ3_RS00895 (SCAZ3_07885) pbp2b 201471..203534 (-) 2064 WP_003044233.1 penicillin-binding protein PBP2B -
  SCAZ3_RS00900 (SCAZ3_07890) - 203638..204408 (-) 771 WP_003044237.1 formate/nitrite transporter family protein -
  SCAZ3_RS00905 (SCAZ3_07895) - 204541..205083 (-) 543 WP_003044240.1 hypothetical protein -
  SCAZ3_RS00910 (SCAZ3_07900) - 205199..205720 (-) 522 WP_003044242.1 transcription repressor NadR -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21727.92 Da        Isoelectric Point: 5.0690

>NTDB_id=54291 SCAZ3_RS00890 WP_003044231.1 200863..201459(-) (recR) [Streptococcus canis FSL Z3-227]
MLYPTPIAKLIESYSKLPGIGVKTATRLAFYTIGMSNEDVNDFAKNLLAAKRELTYCSICGNLTDDDPCHICTDTSRDQT
TILVVEDAKDVSAMEKIQEYHGYYHVLHGLISPMNGVGPDDINLKRLITRLMDGKVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=54291 SCAZ3_RS00890 WP_003044231.1 200863..201459(-) (recR) [Streptococcus canis FSL Z3-227]
GTGCTTTACCCAACCCCTATTGCAAAATTAATTGAAAGTTATTCCAAACTCCCAGGAATCGGGGTTAAAACGGCAACCAG
ACTTGCCTTTTACACGATTGGAATGTCTAATGAAGACGTTAATGATTTTGCTAAAAATTTATTGGCCGCTAAGAGAGAAC
TGACCTATTGTTCGATTTGTGGAAACCTTACCGATGACGATCCTTGTCACATTTGCACAGACACGAGCCGTGATCAGACG
ACCATTCTGGTAGTAGAAGATGCTAAAGATGTTTCTGCTATGGAAAAAATCCAAGAGTATCATGGCTATTATCATGTGCT
TCACGGCTTAATTTCGCCCATGAATGGTGTGGGGCCAGATGACATCAATCTTAAACGTTTAATTACCCGTTTAATGGATG
GTAAGGTGACCGAAGTTATCGTAGCTACCAATGCTACAGCTGATGGGGAGGCAACGTCCATGTATATCTCACGGGTCTTG
AAGCCAGCAGGAATCAAGGTAACCCGCTTAGCAAGAGGTCTCGCTGTTGGCTCAGATATTGAGTATGCTGATGAAGTGAC
CCTACTAAGAGCTATTGAAAATCGGACAGAGCTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.869

100

0.869
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.769

98.485

0.5

Multiple sequence alignment