Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/celB   Type   Machinery gene
Locus tag   SCAZ3_RS00820 Genome accession   NZ_AIDX01000001
Coordinates   184285..186528 (-) Length   747 a.a.
NCBI ID   WP_003044194.1    Uniprot ID   -
Organism   Streptococcus canis FSL Z3-227     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 179285..191528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCAZ3_RS00800 (SCAZ3_07785) - 179902..181122 (+) 1221 WP_039994689.1 DUF3114 domain-containing protein -
  SCAZ3_RS00805 (SCAZ3_07790) - 181236..182249 (-) 1014 WP_051026428.1 serine hydrolase -
  SCAZ3_RS00810 (SCAZ3_07795) sodA 182463..183068 (-) 606 WP_003044189.1 superoxide dismutase SodA -
  SCAZ3_RS00815 (SCAZ3_07800) holA 183165..184205 (-) 1041 WP_003044192.1 DNA polymerase III subunit delta -
  SCAZ3_RS00820 (SCAZ3_07805) comEC/celB 184285..186528 (-) 2244 WP_003044194.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SCAZ3_RS00825 - 186509..187172 (-) 664 Protein_171 helix-hairpin-helix domain-containing protein -
  SCAZ3_RS00830 (SCAZ3_07820) - 187375..188115 (-) 741 WP_003044195.1 lysophospholipid acyltransferase family protein -
  SCAZ3_RS00835 (SCAZ3_07825) - 188233..189009 (+) 777 WP_003044198.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  SCAZ3_RS00840 (SCAZ3_07830) - 188999..189277 (+) 279 WP_003044201.1 GIY-YIG nuclease family protein -
  SCAZ3_RS00845 (SCAZ3_07835) - 189405..191405 (-) 2001 WP_003044204.1 KUP/HAK/KT family potassium transporter -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 85082.98 Da        Isoelectric Point: 9.7278

>NTDB_id=54290 SCAZ3_RS00820 WP_003044194.1 184285..186528(-) (comEC/celB) [Streptococcus canis FSL Z3-227]
MTFSWTKLLPLPKIQLAFLVLVLFYHIYSPSWLTSLLSLGLICLLVKRLSKREFLSVFALLSLCALFLLYQKQQLTQELD
IQPVQITSVELIPDSIRINGDQLAVIGRHGKHSYQLFYRLKSQAEAQLFKKEHRWLVLHAKVTLEKAEEVRNFKGFNYQT
FLAYQGIYRIGKVEQMEQLEVSSPKSVFDYLSSLRRQAIVHCQQHFPKPMSHYLTGLLFGYLDKSFGEMTDYYSQLGIIH
LFALSGMQVGFFLTYFRRLLLLLAVPLEWIKWIELPFACFYAALTGYSISVIRSLVQSQLRHLGIKGLDNLACTFLLVFL
WDAHFLMTVGGVLTFSYAFMLTIVTVEELSGAKRQLVQALIISLGMLPLLLFYFSSFNPMSIILTGLLSYLFDVLILPLL
CLVFCLSPLVTVSVCNHLFLLLEKGIQFLGNTVNTSLVFGSPTSWQLLLIVLSFAILYDYRQVRQRVFACGLVIALTLLS
VKYPLTNEVTIVDIGQGDSILIRDWRGKTLLIDVGGRPTFSKKEKWRSGYQTANAQKTLIPYLKSRGIHKIDQLLLTHTD
ADHMGDMEVVAKAVRVKEVLTSQGSLTNPSAVQRLNRLKCQVKVVKAGDQLSIMGSTLQVLYPWKLGDGKNNDSLVLYGK
LLNRTFLFTGDLEKEGEVEIIKRYPQLRVDYLKAGHHGSNTSSSAVFLDHLQPKLAFISAGKNNRYHHPSKETLTRLEDR
QITYYRTDTQGAIRLTGWTSWHLETVR

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=54290 SCAZ3_RS00820 WP_003044194.1 184285..186528(-) (comEC/celB) [Streptococcus canis FSL Z3-227]
ATGACATTTTCTTGGACTAAGCTATTGCCCCTGCCAAAGATTCAATTAGCTTTTTTGGTTTTGGTTCTCTTTTATCACAT
TTATAGTCCTAGCTGGTTAACTTCTCTTCTTAGTCTTGGTTTGATTTGCTTACTTGTAAAGCGTTTGTCTAAAAGAGAAT
TTCTCAGTGTTTTTGCCCTCCTTAGTTTATGTGCTTTGTTCTTACTCTATCAGAAACAACAGCTGACCCAAGAACTGGAC
ATTCAGCCAGTACAAATAACCTCTGTAGAATTGATTCCTGATAGTATTCGGATTAATGGTGATCAATTAGCTGTTATTGG
ACGTCATGGGAAACACTCCTATCAGTTATTTTACCGTTTGAAAAGCCAAGCAGAAGCCCAATTGTTCAAAAAAGAACACC
GTTGGTTAGTGCTGCACGCAAAAGTGACCTTGGAAAAAGCTGAGGAGGTTCGCAATTTTAAAGGATTTAATTACCAGACT
TTTTTGGCTTATCAGGGAATTTACAGGATAGGGAAGGTAGAGCAAATGGAACAGCTTGAAGTGAGCTCTCCAAAGTCAGT
GTTTGATTACTTGTCTTCCTTAAGACGGCAGGCCATTGTCCATTGTCAACAGCATTTTCCTAAACCCATGTCTCACTACC
TGACAGGTCTCCTTTTTGGTTATTTAGATAAGTCGTTTGGTGAGATGACAGATTATTATAGCCAGCTGGGCATCATTCAT
CTCTTTGCCTTATCAGGGATGCAGGTTGGTTTCTTTCTCACTTATTTTAGAAGGTTGTTGCTATTACTAGCAGTTCCTTT
GGAATGGATAAAATGGATAGAGCTTCCTTTTGCTTGCTTTTATGCCGCGCTGACAGGTTATAGTATTTCTGTTATTCGAA
GCCTCGTGCAGTCGCAGTTGCGTCATTTAGGCATAAAAGGTTTAGACAATCTCGCTTGTACTTTTTTACTTGTCTTTTTA
TGGGATGCCCATTTCTTAATGACTGTTGGTGGGGTATTAACATTTAGCTATGCTTTTATGTTAACAATAGTTACTGTTGA
AGAATTATCAGGAGCTAAAAGACAGTTGGTACAAGCGCTAATTATCTCCTTAGGAATGTTACCGTTACTGCTGTTTTATT
TTTCCAGTTTTAATCCGATGTCAATAATATTAACAGGTCTCTTGTCTTACCTCTTTGACGTTTTGATTTTGCCTCTTCTT
TGTCTGGTTTTCTGTCTATCCCCTTTGGTGACTGTCTCAGTATGCAATCATCTCTTTCTTTTATTAGAAAAGGGGATTCA
ATTTCTTGGAAATACTGTCAATACTTCCCTTGTTTTTGGAAGTCCAACTAGTTGGCAATTACTTCTTATAGTGCTCAGCT
TTGCGATTCTTTATGACTATCGACAGGTGCGACAAAGGGTCTTCGCTTGTGGATTGGTCATAGCATTGACCTTACTGTCT
GTCAAATACCCTTTGACAAATGAAGTCACTATCGTTGATATTGGACAAGGAGATAGTATTTTGATAAGGGATTGGCGAGG
AAAGACACTCTTGATAGACGTTGGAGGACGTCCAACCTTTTCTAAAAAGGAGAAATGGCGCAGCGGTTATCAGACGGCGA
ATGCCCAAAAAACCTTAATCCCTTATTTAAAAAGCAGAGGCATTCATAAAATTGATCAGTTATTACTAACTCATACGGAT
GCTGATCACATGGGAGATATGGAAGTGGTTGCCAAAGCCGTTCGAGTGAAGGAAGTGTTAACTAGCCAAGGTAGTTTAAC
GAACCCAAGTGCTGTGCAACGTTTAAACCGTTTAAAATGTCAGGTTAAGGTTGTTAAAGCTGGCGACCAGTTGTCCATTA
TGGGAAGCACCTTGCAGGTCCTCTATCCTTGGAAACTAGGAGATGGAAAAAATAATGATTCTTTGGTCCTCTATGGCAAG
CTATTAAATCGAACTTTTCTTTTCACAGGGGACTTGGAAAAAGAAGGAGAAGTTGAGATTATCAAACGTTATCCCCAGTT
AAGGGTGGATTATTTGAAAGCTGGCCATCATGGGTCAAATACTTCTTCAAGTGCAGTTTTTTTAGACCATCTTCAGCCCA
AGCTTGCTTTTATTTCTGCAGGAAAGAATAATCGGTACCACCATCCTAGTAAAGAGACCTTAACACGTTTGGAAGACAGA
CAAATCACGTATTATCGAACTGATACTCAAGGAGCTATTCGTTTGACTGGTTGGACCAGCTGGCATCTTGAAACGGTCCG
TTAG

Domains

Predicted by InterProScan.

Competence protein (Competence)

(217-462)

Metallo-beta-lactamase superfamily (Lactamase_B)

(495-696)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis SK321

47.059

100

0.471
  comEC/celB Streptococcus mitis NCTC 12261

46.917

99.866

0.469
  comEC/celB Streptococcus pneumoniae Rx1

45.455

100

0.455
  comEC/celB Streptococcus pneumoniae D39

45.455

100

0.455
  comEC/celB Streptococcus pneumoniae R6

45.455

100

0.455
  comEC/celB Streptococcus pneumoniae TIGR4

45.515

100

0.455
  comEC Lactococcus lactis subsp. cremoris KW2

41.879

99.732

0.418

Multiple sequence alignment