Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SDSE_RS12370 Genome accession   NC_019042
Coordinates   336345..337271 (+) Length   308 a.a.
NCBI ID   WP_003049687.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis AC-2713     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 331345..342271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDSE_RS12360 (S_dysgal_equisimilis_AC2713_390) amiA 332807..334777 (+) 1971 WP_003057820.1 peptide ABC transporter substrate-binding protein Regulator
  SDSE_RS12365 (S_dysgal_equisimilis_AC2713_391) amiC 334843..336345 (+) 1503 WP_003057826.1 ABC transporter permease Regulator
  SDSE_RS12370 (S_dysgal_equisimilis_AC2713_392) amiD 336345..337271 (+) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  SDSE_RS12375 (S_dysgal_equisimilis_AC2713_393) amiE 337280..338350 (+) 1071 WP_003057822.1 ABC transporter ATP-binding protein Regulator
  SDSE_RS12380 (S_dysgal_equisimilis_AC2713_394) amiF 338343..339266 (+) 924 WP_003057816.1 ABC transporter ATP-binding protein Regulator
  SDSE_RS12385 (S_dysgal_equisimilis_AC2713_395) - 339294..340280 (-) 987 WP_015057328.1 IS30-like element IS1239 family transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34888.93 Da        Isoelectric Point: 9.2024

>NTDB_id=54289 SDSE_RS12370 WP_003049687.1 336345..337271(+) (amiD) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
METIDKSKFRFVERDSRASEVIDTPAYSYWKSVFRQFFSKKSTIFMLMILVTILLMSFIYPMFANYDFGDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINVTIGVILGAIWGVSKAFDKVMIEIYNVISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAIKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=54289 SDSE_RS12370 WP_003049687.1 336345..337271(+) (amiD) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
ATGGAAACGATTGATAAATCAAAATTTCGATTTGTTGAGCGCGATAGCAGAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTATTGGAAATCCGTATTCCGTCAATTTTTCTCTAAAAAGTCTACTATCTTCATGCTAATGATTTTAGTGACCATCT
TATTGATGAGTTTTATTTACCCAATGTTTGCGAATTATGACTTTGGTGATGTGAGTAATATCAACGATTTCTCGAAACGT
TATATTTGGCCCAACGCCGAATACTGGTTTGGAACAGATAAAAACGGACAATCTTTGTTTGATGGTGTTTGGTATGGAGC
GCGTAATTCTATCTTAATTTCTGTTATAGCAACATTGATTAATGTGACTATCGGAGTTATTTTAGGAGCTATTTGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAGATTTATAATGTCATCTCAAACATTCCTTCAATGTTAATTATCATTGTT
TTGACCTATTCATTAGGTGCTGGTTTTTGGAATTTGATTTTAGCTTTCTGTATCACTGGATGGATCGGTGTAGCTTACTC
TATCCGTGTGCAAATCTTACGTTACCGTGATTTGGAGTACAACCTTGCTAGCCAAACCCTAGGAACACCAATGTACAAAA
TTGCCATTAAGAACCTCTTGCCTCAATTGGTTTCAGTTATCATGACCATGTTGTCACAAATGTTACCAGTGTACGTGTCT
TCTGAGGCTTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACGACTCCAAGCTTAGGGCGTTTGATTGCTAATTATTC
TAGCAACTTAACAACAAATGCTTACCTCTTCTGGATTCCCTTAGTAACGTTGATTTTAGTATCATTACCATTGTATATTG
TCGGACAAAACCTGGCAGATGCCAGCGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.052

100

0.731
  amiD Streptococcus thermophilus LMG 18311

73.052

100

0.731
  amiD Streptococcus thermophilus LMD-9

73.052

100

0.731

Multiple sequence alignment