Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   SDSE_RS11295 Genome accession   NC_019042
Coordinates   112890..113921 (+) Length   343 a.a.
NCBI ID   WP_015057201.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis AC-2713     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 107890..118921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDSE_RS11285 (S_dysgal_equisimilis_AC2713_169) - 111567..111932 (+) 366 WP_003055257.1 DUF1033 family protein -
  SDSE_RS11290 (S_dysgal_equisimilis_AC2713_170) comGA/cglA 112013..112954 (+) 942 WP_003055265.1 competence type IV pilus ATPase ComGA Machinery gene
  SDSE_RS11295 (S_dysgal_equisimilis_AC2713_171) comYB 112890..113921 (+) 1032 WP_015057201.1 competence type IV pilus assembly protein ComGB Machinery gene
  SDSE_RS11300 (S_dysgal_equisimilis_AC2713_172) comYC 113923..114249 (+) 327 WP_003055259.1 competence type IV pilus major pilin ComGC Machinery gene
  SDSE_RS11305 (S_dysgal_equisimilis_AC2713_173) comGD 114224..114652 (+) 429 WP_041781473.1 competence type IV pilus minor pilin ComGD -
  SDSE_RS11310 (S_dysgal_equisimilis_AC2713_174) comGE 114660..114905 (+) 246 WP_003058569.1 competence type IV pilus minor pilin ComGE -
  SDSE_RS11315 (S_dysgal_equisimilis_AC2713_175) comGF 114886..115326 (+) 441 WP_003058520.1 competence type IV pilus minor pilin ComGF -
  SDSE_RS11320 (S_dysgal_equisimilis_AC2713_176) comGG 115349..115678 (+) 330 WP_003058539.1 competence type IV pilus minor pilin ComGG -
  SDSE_RS11325 (S_dysgal_equisimilis_AC2713_177) comYH 115741..116694 (+) 954 WP_003060701.1 class I SAM-dependent methyltransferase Machinery gene
  SDSE_RS11330 (S_dysgal_equisimilis_AC2713_178) - 116753..117949 (+) 1197 WP_015057203.1 acetate kinase -
  SDSE_RS11335 (S_dysgal_equisimilis_AC2713_179) - 118255..118461 (+) 207 WP_003058508.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 38953.34 Da        Isoelectric Point: 9.2055

>NTDB_id=54279 SDSE_RS11295 WP_015057201.1 112890..113921(+) (comYB) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
MTFLQRDISVRSKQGLKKLSSKEQYKLIQLLANLLLTGFNLAEIIAFLTKSHLIPEPYVLRMEEALLKGRGLADMLAGIG
FSDAILTQISLADGHGNIETTLVNIQGYLNQMAKLKRKTIEVVTYPIILLVFLFVMILGLRHYVMPQLEAQNQLTIFLTH
FPAIFFGIILFIGVLLGGIWLHWRSQSRLKLFTHFSAYPVLGKLLQQYLTAYYAREWGTLIGQGLELPVILDIMAMEKSL
FMQELAEDIRVSLLAGQAFHDKVATYPFFKKELSLMITYGEIKSKLGSELEIYAQESWTQFFSQLHQATQFIQPIIFLVI
ALTIVMIYAAILLPIYQNMGGVL

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=54279 SDSE_RS11295 WP_015057201.1 112890..113921(+) (comYB) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
ATGACCTTCTTGCAGCGGGACATCTCAGTCCGGAGCAAGCAAGGTTTGAAAAAATTATCCAGTAAGGAACAATACAAACT
AATTCAGCTATTAGCTAACCTTTTGTTAACAGGATTTAACTTGGCTGAGATAATAGCTTTCTTAACAAAAAGTCATTTGA
TTCCCGAGCCCTATGTTCTCCGCATGGAAGAAGCACTCTTAAAAGGTCGAGGGCTGGCAGATATGTTAGCTGGGATAGGT
TTTTCGGATGCTATTTTAACTCAAATTAGTTTAGCAGATGGTCACGGAAACATTGAGACGACGCTTGTTAATATTCAGGG
CTATCTCAACCAAATGGCTAAACTTAAACGAAAAACCATTGAAGTCGTCACCTATCCGATTATTCTCCTGGTATTTCTTT
TTGTGATGATATTAGGGTTAAGGCATTATGTTATGCCTCAATTAGAAGCTCAAAATCAGCTTACTATTTTTCTGACTCAT
TTTCCAGCTATTTTCTTTGGTATTATCCTTTTTATAGGTGTGCTGTTAGGGGGAATTTGGCTGCATTGGCGATCGCAAAG
TCGCCTCAAGCTTTTTACTCACTTCAGTGCTTATCCTGTTTTAGGGAAACTCTTACAACAGTATCTGACGGCTTATTATG
CTAGAGAATGGGGAACATTGATTGGACAGGGACTTGAATTACCAGTCATTCTGGATATTATGGCCATGGAGAAATCTTTA
TTCATGCAAGAATTGGCTGAAGATATTCGAGTTAGTTTATTGGCAGGACAAGCTTTTCATGATAAGGTAGCTACCTATCC
TTTCTTTAAAAAAGAGTTAAGTTTGATGATTACTTATGGAGAGATTAAATCCAAGTTAGGAAGTGAACTAGAGATTTATG
CTCAAGAGAGTTGGACTCAGTTTTTCAGCCAACTTCATCAAGCAACTCAGTTTATTCAACCGATTATCTTTTTAGTGATT
GCTCTGACGATTGTCATGATTTATGCAGCAATTTTATTACCAATTTATCAAAATATGGGAGGCGTTTTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(28-146)

Type II secretion system (T2SS), protein F (T2SSF)

(214-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

53.392

98.834

0.528
  comYB Streptococcus mutans UA159

53.392

98.834

0.528
  comYB Streptococcus gordonii str. Challis substr. CH1

48.673

98.834

0.481
  comGB/cglB Streptococcus mitis NCTC 12261

45.97

97.668

0.449
  comGB/cglB Streptococcus mitis SK321

45.345

97.085

0.44
  comGB/cglB Streptococcus pneumoniae Rx1

43.844

97.085

0.426
  comGB/cglB Streptococcus pneumoniae D39

43.844

97.085

0.426
  comGB/cglB Streptococcus pneumoniae R6

43.844

97.085

0.426
  comGB/cglB Streptococcus pneumoniae TIGR4

43.844

97.085

0.426
  comGB Lactococcus lactis subsp. cremoris KW2

42.773

98.834

0.423

Multiple sequence alignment