Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | SDSE_RS11325 | Genome accession | NC_019042 |
| Coordinates | 115741..116694 (+) | Length | 317 a.a. |
| NCBI ID | WP_003060701.1 | Uniprot ID | A0A9X8T146 |
| Organism | Streptococcus dysgalactiae subsp. equisimilis AC-2713 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 110741..121694
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SDSE_RS11285 (S_dysgal_equisimilis_AC2713_169) | - | 111567..111932 (+) | 366 | WP_003055257.1 | DUF1033 family protein | - |
| SDSE_RS11290 (S_dysgal_equisimilis_AC2713_170) | comGA/cglA | 112013..112954 (+) | 942 | WP_003055265.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SDSE_RS11295 (S_dysgal_equisimilis_AC2713_171) | comYB | 112890..113921 (+) | 1032 | WP_015057201.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| SDSE_RS11300 (S_dysgal_equisimilis_AC2713_172) | comYC | 113923..114249 (+) | 327 | WP_003055259.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| SDSE_RS11305 (S_dysgal_equisimilis_AC2713_173) | comGD | 114224..114652 (+) | 429 | WP_041781473.1 | competence type IV pilus minor pilin ComGD | - |
| SDSE_RS11310 (S_dysgal_equisimilis_AC2713_174) | comGE | 114660..114905 (+) | 246 | WP_003058569.1 | competence type IV pilus minor pilin ComGE | - |
| SDSE_RS11315 (S_dysgal_equisimilis_AC2713_175) | comGF | 114886..115326 (+) | 441 | WP_003058520.1 | competence type IV pilus minor pilin ComGF | - |
| SDSE_RS11320 (S_dysgal_equisimilis_AC2713_176) | comGG | 115349..115678 (+) | 330 | WP_003058539.1 | competence type IV pilus minor pilin ComGG | - |
| SDSE_RS11325 (S_dysgal_equisimilis_AC2713_177) | comYH | 115741..116694 (+) | 954 | WP_003060701.1 | class I SAM-dependent methyltransferase | Machinery gene |
| SDSE_RS11330 (S_dysgal_equisimilis_AC2713_178) | - | 116753..117949 (+) | 1197 | WP_015057203.1 | acetate kinase | - |
| SDSE_RS11335 (S_dysgal_equisimilis_AC2713_179) | - | 118255..118461 (+) | 207 | WP_003058508.1 | helix-turn-helix transcriptional regulator | - |
| SDSE_RS11340 (S_dysgal_equisimilis_AC2713_180) | - | 118564..119244 (+) | 681 | WP_012766451.1 | type II CAAX endopeptidase family protein | - |
| SDSE_RS11345 (S_dysgal_equisimilis_AC2713_181) | - | 119262..119699 (+) | 438 | WP_012766452.1 | hypothetical protein | - |
| SDSE_RS11350 (S_dysgal_equisimilis_AC2713_182) | proC | 119838..120613 (-) | 776 | Protein_106 | pyrroline-5-carboxylate reductase | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 36049.01 Da Isoelectric Point: 4.7910
>NTDB_id=54281 SDSE_RS11325 WP_003060701.1 115741..116694(+) (comYH) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
MNFEKIEEAYQLLLENSQLIENDLKTHIYDAIVEQNSFYLGAEGASPQVAQNINKLKALHLTKEEWRRAYQFIFIKAAQT
EQLQANHQFTPDAIGFILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKKLDYVGIELDDLLIDLSASIAEVMDSS
ARFIQEDAVRPQLLKESDVVISDLPVGYYPNDDIAKRYKVASSEEHTYAHHLLMEQSLKYLKKDGFAIFLAPVNLLTSSQ
SQLLKNWLTGYAQVVALITLPDSIFGHPSNAKSIIVLQKQTDHPMETFVYPIRDLKLAENIHDFMQNFKKWKQDNVN
MNFEKIEEAYQLLLENSQLIENDLKTHIYDAIVEQNSFYLGAEGASPQVAQNINKLKALHLTKEEWRRAYQFIFIKAAQT
EQLQANHQFTPDAIGFILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKKLDYVGIELDDLLIDLSASIAEVMDSS
ARFIQEDAVRPQLLKESDVVISDLPVGYYPNDDIAKRYKVASSEEHTYAHHLLMEQSLKYLKKDGFAIFLAPVNLLTSSQ
SQLLKNWLTGYAQVVALITLPDSIFGHPSNAKSIIVLQKQTDHPMETFVYPIRDLKLAENIHDFMQNFKKWKQDNVN
Nucleotide
Download Length: 954 bp
>NTDB_id=54281 SDSE_RS11325 WP_003060701.1 115741..116694(+) (comYH) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
ATGAATTTTGAAAAAATTGAAGAAGCCTATCAGTTACTTTTAGAGAATAGTCAACTGATTGAAAATGATCTAAAAACACA
TATTTATGATGCCATCGTTGAGCAAAACTCTTTTTATTTAGGTGCTGAGGGAGCTAGTCCTCAAGTTGCCCAGAACATTA
ACAAACTGAAAGCCTTACACCTGACTAAAGAAGAATGGCGGAGAGCTTACCAGTTTATTTTTATTAAGGCAGCTCAGACT
GAGCAGCTCCAAGCAAACCATCAGTTCACGCCAGATGCTATTGGTTTCATTCTGCTGTATCTTTTGGAACAATTGAGTGA
CAAAGATAGCCTAGAAGTCCTTGAAATTGGCAGTGGTACGGGAAATCTAGCACAAACTCTCCTCAATAATACGAGTAAGA
AACTTGATTATGTAGGAATTGAACTTGACGACCTCTTAATTGATTTATCAGCAAGTATTGCTGAAGTAATGGACTCTTCA
GCTCGTTTTATTCAAGAAGATGCTGTAAGACCGCAATTGTTAAAAGAAAGCGATGTTGTTATCAGTGACTTGCCAGTGGG
TTATTATCCTAATGATGACATTGCTAAGCGCTATAAGGTAGCTAGTTCTGAGGAACACACCTATGCTCATCATTTACTCA
TGGAACAATCTTTAAAGTATTTGAAAAAAGATGGTTTTGCCATTTTCTTGGCACCTGTCAATTTGTTGACAAGCTCTCAG
AGCCAATTGTTGAAAAATTGGTTAACTGGCTATGCCCAGGTAGTGGCCTTGATTACTCTACCAGATTCTATATTTGGTCA
TCCCTCTAATGCTAAGTCCATTATTGTCTTGCAAAAGCAGACAGACCATCCGATGGAAACCTTTGTTTATCCTATTCGAG
ACTTGAAGCTTGCAGAGAATATTCATGACTTTATGCAAAATTTCAAAAAATGGAAACAGGATAATGTCAATTAA
ATGAATTTTGAAAAAATTGAAGAAGCCTATCAGTTACTTTTAGAGAATAGTCAACTGATTGAAAATGATCTAAAAACACA
TATTTATGATGCCATCGTTGAGCAAAACTCTTTTTATTTAGGTGCTGAGGGAGCTAGTCCTCAAGTTGCCCAGAACATTA
ACAAACTGAAAGCCTTACACCTGACTAAAGAAGAATGGCGGAGAGCTTACCAGTTTATTTTTATTAAGGCAGCTCAGACT
GAGCAGCTCCAAGCAAACCATCAGTTCACGCCAGATGCTATTGGTTTCATTCTGCTGTATCTTTTGGAACAATTGAGTGA
CAAAGATAGCCTAGAAGTCCTTGAAATTGGCAGTGGTACGGGAAATCTAGCACAAACTCTCCTCAATAATACGAGTAAGA
AACTTGATTATGTAGGAATTGAACTTGACGACCTCTTAATTGATTTATCAGCAAGTATTGCTGAAGTAATGGACTCTTCA
GCTCGTTTTATTCAAGAAGATGCTGTAAGACCGCAATTGTTAAAAGAAAGCGATGTTGTTATCAGTGACTTGCCAGTGGG
TTATTATCCTAATGATGACATTGCTAAGCGCTATAAGGTAGCTAGTTCTGAGGAACACACCTATGCTCATCATTTACTCA
TGGAACAATCTTTAAAGTATTTGAAAAAAGATGGTTTTGCCATTTTCTTGGCACCTGTCAATTTGTTGACAAGCTCTCAG
AGCCAATTGTTGAAAAATTGGTTAACTGGCTATGCCCAGGTAGTGGCCTTGATTACTCTACCAGATTCTATATTTGGTCA
TCCCTCTAATGCTAAGTCCATTATTGTCTTGCAAAAGCAGACAGACCATCCGATGGAAACCTTTGTTTATCCTATTCGAG
ACTTGAAGCTTGCAGAGAATATTCATGACTTTATGCAAAATTTCAAAAAATGGAAACAGGATAATGTCAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
66.456 |
99.685 |
0.662 |
| comYH | Streptococcus mutans UA159 |
66.139 |
99.685 |
0.659 |