Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JYA46_RS13770 Genome accession   NZ_CP070991
Coordinates   2760278..2760748 (+) Length   156 a.a.
NCBI ID   WP_017466775.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CBS2016-05     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2732983..2766466 2760278..2760748 within 0


Gene organization within MGE regions


Location: 2732983..2766466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYA46_RS13605 (JYA46_002721) - 2732983..2733609 (-) 627 WP_070043934.1 nitroreductase family protein -
  JYA46_RS13610 (JYA46_002722) - 2733806..2735017 (+) 1212 WP_117222426.1 SdrH family protein -
  JYA46_RS13615 (JYA46_002723) mroQ 2735040..2735783 (-) 744 WP_000197638.1 CPBP family intramembrane glutamic endopeptidase MroQ -
  JYA46_RS13620 (JYA46_002724) groES 2735958..2736242 (+) 285 WP_000917289.1 co-chaperone GroES -
  JYA46_RS13625 (JYA46_002725) groL 2736318..2737934 (+) 1617 WP_072491860.1 chaperonin GroEL -
  JYA46_RS13630 (JYA46_002726) - 2738479..2738658 (+) 180 WP_000201394.1 hypothetical protein -
  JYA46_RS13640 (JYA46_002728) - 2738798..2739274 (+) 477 WP_247662402.1 hypothetical protein -
  JYA46_RS13645 (JYA46_002729) - 2739846..2741153 (-) 1308 WP_001045081.1 TrkH family potassium uptake protein -
  JYA46_RS13650 (JYA46_002730) hemA 2741728..2742930 (+) 1203 WP_210994213.1 5-aminolevulinate synthase -
  JYA46_RS13655 (JYA46_002731) - 2742933..2743802 (+) 870 WP_001108473.1 DMT family transporter -
  JYA46_RS13660 (JYA46_002732) - 2744300..2745523 (-) 1224 WP_072491863.1 ArgE/DapE family deacylase -
  JYA46_RS13665 (JYA46_002733) lukH 2745959..2747014 (+) 1056 WP_000791409.1 bi-component leukocidin LukGH subunit H -
  JYA46_RS13670 (JYA46_002734) lukG 2747036..2748052 (+) 1017 WP_000595397.1 bi-component leukocidin LukGH subunit G -
  JYA46_RS13675 (JYA46_002735) sph 2748568..2749398 (-) 831 Protein_2661 sphingomyelin phosphodiesterase -
  JYA46_RS13680 (JYA46_002736) - 2749449..2750486 (-) 1038 WP_061651379.1 site-specific integrase -
  JYA46_RS13685 (JYA46_002737) - 2750677..2751390 (-) 714 WP_001549185.1 type II toxin-antitoxin system PemK/MazF family toxin -
  JYA46_RS13690 (JYA46_002738) - 2751469..2751651 (-) 183 WP_000705243.1 hypothetical protein -
  JYA46_RS13695 (JYA46_002739) - 2751807..2752505 (-) 699 WP_000837517.1 potassium channel family protein -
  JYA46_RS13700 (JYA46_002740) - 2752687..2753319 (-) 633 WP_031763806.1 XRE family transcriptional regulator -
  JYA46_RS13705 (JYA46_002741) - 2753473..2753700 (+) 228 WP_000192116.1 helix-turn-helix transcriptional regulator -
  JYA46_RS13710 (JYA46_002742) - 2753723..2754511 (+) 789 WP_210994214.1 phage antirepressor KilAC domain-containing protein -
  JYA46_RS13715 (JYA46_002743) - 2754528..2754722 (+) 195 WP_001566738.1 hypothetical protein -
  JYA46_RS13720 (JYA46_002744) - 2754717..2755073 (-) 357 WP_000768245.1 DUF2513 domain-containing protein -
  JYA46_RS13725 (JYA46_002745) - 2755123..2755314 (+) 192 WP_000389905.1 hypothetical protein -
  JYA46_RS13730 (JYA46_002746) - 2755316..2755543 (-) 228 WP_000801108.1 hypothetical protein -
  JYA46_RS13735 (JYA46_002747) - 2755602..2755922 (+) 321 WP_210994215.1 DUF771 domain-containing protein -
  JYA46_RS13740 (JYA46_002748) - 2755919..2756080 (+) 162 WP_000066020.1 DUF1270 domain-containing protein -
  JYA46_RS13745 (JYA46_002749) - 2756173..2756433 (+) 261 WP_000291488.1 DUF1108 family protein -
  JYA46_RS13750 (JYA46_002750) - 2756442..2756705 (+) 264 WP_001205732.1 hypothetical protein -
  JYA46_RS13755 (JYA46_002751) - 2756702..2758657 (+) 1956 WP_061651381.1 AAA family ATPase -
  JYA46_RS13760 (JYA46_002752) - 2758659..2759579 (+) 921 WP_000138475.1 recombinase RecT -
  JYA46_RS13765 (JYA46_002753) - 2759660..2760277 (+) 618 WP_071621397.1 MBL fold metallo-hydrolase -
  JYA46_RS13770 (JYA46_002754) ssbA 2760278..2760748 (+) 471 WP_017466775.1 single-stranded DNA-binding protein Machinery gene
  JYA46_RS13775 (JYA46_002755) - 2760778..2761662 (+) 885 WP_000148309.1 DnaD domain protein -
  JYA46_RS13780 (JYA46_002756) - 2761669..2761887 (+) 219 WP_000338528.1 hypothetical protein -
  JYA46_RS13785 (JYA46_002757) - 2761896..2762300 (+) 405 WP_061651382.1 RusA family crossover junction endodeoxyribonuclease -
  JYA46_RS13790 (JYA46_002758) - 2762313..2762684 (+) 372 WP_061651383.1 SA1788 family PVL leukocidin-associated protein -
  JYA46_RS13795 (JYA46_002759) - 2762685..2762933 (+) 249 WP_001126839.1 phi PVL orf 51-like protein -
  JYA46_RS13800 (JYA46_002760) - 2762997..2763344 (+) 348 WP_000982695.1 YopX family protein -
  JYA46_RS13805 (JYA46_002761) - 2763341..2763766 (+) 426 WP_061651384.1 hypothetical protein -
  JYA46_RS13810 (JYA46_002762) - 2763723..2763971 (+) 249 WP_031795415.1 DUF1024 family protein -
  JYA46_RS13815 (JYA46_002763) - 2763964..2764497 (+) 534 WP_061651385.1 dUTP pyrophosphatase -
  JYA46_RS13820 (JYA46_002764) - 2764534..2764779 (+) 246 WP_001282070.1 hypothetical protein -
  JYA46_RS13825 (JYA46_002765) - 2764776..2764964 (+) 189 WP_000195782.1 DUF1381 domain-containing protein -
  JYA46_RS13830 (JYA46_002766) - 2764939..2765139 (+) 201 WP_001125015.1 hypothetical protein -
  JYA46_RS13835 (JYA46_002767) - 2765142..2765291 (+) 150 WP_000237868.1 transcriptional activator RinB -
  JYA46_RS13840 (JYA46_002768) - 2765291..2765491 (+) 201 WP_000265043.1 DUF1514 family protein -
  JYA46_RS13845 (JYA46_002769) - 2765519..2765935 (+) 417 WP_000590122.1 hypothetical protein -
  JYA46_RS13850 (JYA46_002770) - 2766167..2766466 (+) 300 WP_000988330.1 HNH endonuclease -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17730.57 Da        Isoelectric Point: 4.7821

>NTDB_id=541997 JYA46_RS13770 WP_017466775.1 2760278..2760748(+) (ssbA) [Staphylococcus aureus strain CBS2016-05]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTNDNQQDLYQQQAQQSRGQSQYPYNKPVKDNPFANANDPIEIDDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=541997 JYA46_RS13770 WP_017466775.1 2760278..2760748(+) (ssbA) [Staphylococcus aureus strain CBS2016-05]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGCGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAAATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAATCACGTGGACAGTCTCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.635
  ssb Latilactobacillus sakei subsp. sakei 23K

52.941

100

0.577
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Neisseria meningitidis MC58

34.682

100

0.385
  ssb Neisseria gonorrhoeae MS11

34.682

100

0.385
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365