Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LGV81_RS02505 Genome accession   NZ_CP086265
Coordinates   509183..509704 (+) Length   173 a.a.
NCBI ID   WP_020831290.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain RS647     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 504183..514704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGV81_RS02480 (LGV81_02490) recX 504562..505041 (+) 480 WP_020831287.1 recombination regulator RecX -
  LGV81_RS02485 (LGV81_02495) - 505316..505942 (+) 627 WP_011000512.1 DUF2889 domain-containing protein -
  LGV81_RS02490 (LGV81_02500) sucC 506009..507175 (+) 1167 WP_011000513.1 ADP-forming succinate--CoA ligase subunit beta -
  LGV81_RS02495 (LGV81_02505) sucD 507260..508141 (+) 882 WP_011000514.1 succinate--CoA ligase subunit alpha -
  LGV81_RS02500 (LGV81_02510) - 508291..508989 (+) 699 WP_020831289.1 TerC family protein -
  LGV81_RS02505 (LGV81_02515) pilA 509183..509704 (+) 522 WP_020831290.1 pilin Machinery gene
  LGV81_RS02510 (LGV81_02520) pilA 509970..510479 (+) 510 WP_020831292.1 pilin Machinery gene
  LGV81_RS02515 (LGV81_02525) - 510556..512289 (+) 1734 WP_028852633.1 PglL family O-oligosaccharyltransferase -
  LGV81_RS02520 (LGV81_02530) moaC 512518..512994 (-) 477 WP_011000519.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 17811.51 Da        Isoelectric Point: 9.7091

>NTDB_id=541675 LGV81_RS02505 WP_020831290.1 509183..509704(+) (pilA) [Ralstonia pseudosolanacearum strain RS647]
MASKYSRNRPRGQRGFTLIELMIVVAIIGILAALAIPAYQDYTIRSRVVEGLALAGQAKALVVENAANAQSSLSLGSASL
PASKNVSALNIDSSTGEIAVVYAPAVTEAGANTLVLTPYSGSSSVFGNLQAGSTPPAMVLWVCAAAGKSMPVNTVTQRTT
ATLPPKYAPSECR

Nucleotide


Download         Length: 522 bp        

>NTDB_id=541675 LGV81_RS02505 WP_020831290.1 509183..509704(+) (pilA) [Ralstonia pseudosolanacearum strain RS647]
ATGGCATCGAAGTACAGCAGGAACCGGCCGCGCGGCCAGCGCGGCTTTACATTGATCGAGTTGATGATCGTGGTGGCGAT
CATTGGGATATTGGCGGCGCTGGCGATTCCGGCGTATCAGGACTACACGATCCGGTCGCGTGTGGTCGAGGGGCTGGCAC
TGGCAGGGCAAGCCAAGGCGCTGGTGGTTGAAAATGCCGCCAACGCACAGAGTAGCCTGTCACTCGGTTCCGCATCGTTG
CCGGCCAGCAAGAACGTCAGTGCGCTGAATATTGATTCGTCCACCGGCGAAATCGCAGTGGTCTATGCACCCGCTGTTAC
GGAAGCGGGGGCGAATACGTTGGTATTGACCCCATACTCCGGCAGTTCGTCAGTATTTGGCAATTTGCAGGCAGGTTCAA
CGCCGCCGGCAATGGTGCTGTGGGTGTGTGCCGCCGCCGGCAAGTCGATGCCGGTCAATACCGTTACCCAGAGGACGACG
GCTACGTTGCCACCGAAATACGCGCCCTCGGAGTGCCGTTGA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(45-173)

Prokaryotic N-terminal methylation motif (N_methyl)

(11-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

51.705

100

0.526
  pilA2 Legionella pneumophila str. Paris

44.848

95.376

0.428
  pilA2 Legionella pneumophila strain ERS1305867

44.242

95.376

0.422
  comP Acinetobacter baylyi ADP1

39.773

100

0.405
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

35.938

100

0.399