Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   JX000_RS12120 Genome accession   NZ_CP070964
Coordinates   1174054..1174350 (+) Length   98 a.a.
NCBI ID   WP_232133479.1    Uniprot ID   -
Organism   Staphylococcus sp. SB1-57     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1169054..1179350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JX000_RS05805 (JX000_05805) yqeK 1169221..1169805 (+) 585 WP_075778379.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  JX000_RS05810 (JX000_05810) rsfS 1169806..1170159 (+) 354 WP_002451843.1 ribosome silencing factor -
  JX000_RS05815 (JX000_05815) - 1170162..1170884 (+) 723 WP_107532552.1 class I SAM-dependent methyltransferase -
  JX000_RS05820 (JX000_05820) - 1170937..1171614 (+) 678 WP_206140992.1 helix-hairpin-helix domain-containing protein -
  JX000_RS05825 (JX000_05825) - 1171699..1172160 (+) 462 WP_002451846.1 ComE operon protein 2 -
  JX000_RS05830 (JX000_05830) - 1172291..1174045 (+) 1755 WP_241005000.1 ComEC/Rec2 family competence protein -
  JX000_RS12120 comEC 1174054..1174350 (+) 297 WP_232133479.1 hypothetical protein Machinery gene
  JX000_RS05835 (JX000_05835) holA 1174421..1175395 (+) 975 WP_124227790.1 DNA polymerase III subunit delta -
  JX000_RS05840 (JX000_05840) rpsT 1175470..1175721 (-) 252 WP_002451849.1 30S ribosomal protein S20 -
  JX000_RS05845 (JX000_05845) lepA 1176053..1177876 (+) 1824 WP_049424319.1 translation elongation factor 4 -
  JX000_RS05850 (JX000_05850) hemW 1178028..1179161 (+) 1134 WP_206140993.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10960.72 Da        Isoelectric Point: 10.7682

>NTDB_id=541620 JX000_RS12120 WP_232133479.1 1174054..1174350(+) (comEC) [Staphylococcus sp. SB1-57]
MSIKNEELLLQRYQLPRIDILKVAHHGSKTSSSHNLIKLIKPKISLISSGKGNKYKLPNQEVIQRLQGFGSKVLDTQVNG
EITVKLNSNLTITTNQPN

Nucleotide


Download         Length: 297 bp        

>NTDB_id=541620 JX000_RS12120 WP_232133479.1 1174054..1174350(+) (comEC) [Staphylococcus sp. SB1-57]
ATGAGTATTAAAAATGAAGAATTGCTTTTACAACGTTATCAATTACCTAGGATAGATATTTTAAAAGTGGCACACCATGG
AAGTAAAACTAGTAGTTCACATAATTTAATTAAATTAATAAAACCAAAAATCAGTCTCATATCGAGTGGAAAAGGTAATA
AATATAAACTACCTAATCAAGAAGTGATTCAACGATTACAAGGATTTGGGAGTAAAGTATTGGATACACAAGTGAATGGA
GAAATAACAGTTAAATTGAATTCGAATTTAACGATTACTACGAATCAACCTAACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Staphylococcus aureus N315

60.44

92.857

0.561
  comEC Staphylococcus aureus MW2

60.44

92.857

0.561
  comEC Lactococcus lactis subsp. cremoris KW2

50.633

80.612

0.408
  comEC/celB Streptococcus mitis SK321

46.341

83.673

0.388
  comEC/celB Streptococcus mitis NCTC 12261

45.122

83.673

0.378
  comEC/celB Streptococcus pneumoniae TIGR4

43.902

83.673

0.367
  comEC/celB Streptococcus pneumoniae Rx1

43.902

83.673

0.367
  comEC/celB Streptococcus pneumoniae D39

43.902

83.673

0.367
  comEC/celB Streptococcus pneumoniae R6

43.902

83.673

0.367