Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | JX000_RS06055 | Genome accession | NZ_CP070964 |
| Coordinates | 1217070..1217387 (+) | Length | 105 a.a. |
| NCBI ID | WP_107533249.1 | Uniprot ID | A0A2T4PXN4 |
| Organism | Staphylococcus sp. SB1-57 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1212070..1222387
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JX000_RS06025 (JX000_06025) | - | 1212861..1213064 (+) | 204 | WP_002451885.1 | YqgQ family protein | - |
| JX000_RS06030 (JX000_06030) | - | 1213061..1214047 (+) | 987 | WP_049425179.1 | ROK family glucokinase | - |
| JX000_RS06035 (JX000_06035) | - | 1214047..1214370 (+) | 324 | WP_002451887.1 | MTH1187 family thiamine-binding protein | - |
| JX000_RS06040 (JX000_06040) | - | 1214374..1214997 (+) | 624 | WP_049425182.1 | MBL fold metallo-hydrolase | - |
| JX000_RS06045 (JX000_06045) | comGA | 1215044..1216018 (+) | 975 | WP_206140516.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| JX000_RS06050 (JX000_06050) | comGB | 1215990..1217057 (+) | 1068 | WP_124224714.1 | competence type IV pilus assembly protein ComGB | - |
| JX000_RS06055 (JX000_06055) | comGC | 1217070..1217387 (+) | 318 | WP_107533249.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| JX000_RS06060 (JX000_06060) | comGD | 1217365..1217805 (+) | 441 | WP_049425186.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| JX000_RS06065 (JX000_06065) | - | 1218003..1218500 (+) | 498 | WP_049425449.1 | competence type IV pilus minor pilin ComGF | - |
| JX000_RS06070 (JX000_06070) | - | 1218659..1219177 (+) | 519 | WP_037552472.1 | shikimate kinase | - |
| JX000_RS06075 (JX000_06075) | gcvT | 1219350..1220441 (+) | 1092 | WP_002451895.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| JX000_RS06080 (JX000_06080) | gcvPA | 1220460..1221809 (+) | 1350 | WP_049425448.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 105 a.a. Molecular weight: 11716.69 Da Isoelectric Point: 8.4954
>NTDB_id=541605 JX000_RS06055 WP_107533249.1 1217070..1217387(+) (comGC) [Staphylococcus sp. SB1-57]
MKKNDYSLKTKAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCDAQVKMINSQIEAYTLKHNRNPNTIQDLITEG
YIKENQRSCKTGETISISNGEAIAN
MKKNDYSLKTKAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCDAQVKMINSQIEAYTLKHNRNPNTIQDLITEG
YIKENQRSCKTGETISISNGEAIAN
Nucleotide
Download Length: 318 bp
>NTDB_id=541605 JX000_RS06055 WP_107533249.1 1217070..1217387(+) (comGC) [Staphylococcus sp. SB1-57]
ATGAAAAAAAACGACTACTCACTTAAAACTAAAGCTTTCACCTTAATCGAGATGCTATTAGTATTATTAATAATAAGTTT
ATTACTTATTTTAATTATTCCTAACATTGCCAAACAAACGGCTCATATACAATCAACCGGTTGCGATGCACAAGTTAAAA
TGATAAATAGCCAAATTGAAGCTTATACACTAAAACATAATAGAAATCCTAATACTATACAGGATTTAATTACAGAAGGA
TATATTAAAGAGAATCAAAGAAGTTGTAAAACAGGTGAAACAATTTCAATAAGTAATGGCGAAGCAATTGCAAATTAA
ATGAAAAAAAACGACTACTCACTTAAAACTAAAGCTTTCACCTTAATCGAGATGCTATTAGTATTATTAATAATAAGTTT
ATTACTTATTTTAATTATTCCTAACATTGCCAAACAAACGGCTCATATACAATCAACCGGTTGCGATGCACAAGTTAAAA
TGATAAATAGCCAAATTGAAGCTTATACACTAAAACATAATAGAAATCCTAATACTATACAGGATTTAATTACAGAAGGA
TATATTAAAGAGAATCAAAGAAGTTGTAAAACAGGTGAAACAATTTCAATAAGTAATGGCGAAGCAATTGCAAATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
83.505 |
92.381 |
0.771 |
| comGC | Staphylococcus aureus N315 |
83.505 |
92.381 |
0.771 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
43.434 |
94.286 |
0.41 |
| comYC | Streptococcus suis isolate S10 |
50 |
76.19 |
0.381 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
42.553 |
89.524 |
0.381 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
41.489 |
89.524 |
0.371 |