Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   JX000_RS06060 Genome accession   NZ_CP070964
Coordinates   1217365..1217805 (+) Length   146 a.a.
NCBI ID   WP_049425186.1    Uniprot ID   -
Organism   Staphylococcus sp. SB1-57     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1212365..1222805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JX000_RS06025 (JX000_06025) - 1212861..1213064 (+) 204 WP_002451885.1 YqgQ family protein -
  JX000_RS06030 (JX000_06030) - 1213061..1214047 (+) 987 WP_049425179.1 ROK family glucokinase -
  JX000_RS06035 (JX000_06035) - 1214047..1214370 (+) 324 WP_002451887.1 MTH1187 family thiamine-binding protein -
  JX000_RS06040 (JX000_06040) - 1214374..1214997 (+) 624 WP_049425182.1 MBL fold metallo-hydrolase -
  JX000_RS06045 (JX000_06045) comGA 1215044..1216018 (+) 975 WP_206140516.1 competence type IV pilus ATPase ComGA Machinery gene
  JX000_RS06050 (JX000_06050) comGB 1215990..1217057 (+) 1068 WP_124224714.1 competence type IV pilus assembly protein ComGB -
  JX000_RS06055 (JX000_06055) comGC 1217070..1217387 (+) 318 WP_107533249.1 competence type IV pilus major pilin ComGC Machinery gene
  JX000_RS06060 (JX000_06060) comGD 1217365..1217805 (+) 441 WP_049425186.1 competence type IV pilus minor pilin ComGD Machinery gene
  JX000_RS06065 (JX000_06065) - 1218003..1218500 (+) 498 WP_049425449.1 competence type IV pilus minor pilin ComGF -
  JX000_RS06070 (JX000_06070) - 1218659..1219177 (+) 519 WP_037552472.1 shikimate kinase -
  JX000_RS06075 (JX000_06075) gcvT 1219350..1220441 (+) 1092 WP_002451895.1 glycine cleavage system aminomethyltransferase GcvT -
  JX000_RS06080 (JX000_06080) gcvPA 1220460..1221809 (+) 1350 WP_049425448.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16945.15 Da        Isoelectric Point: 10.4477

>NTDB_id=541606 JX000_RS06060 WP_049425186.1 1217365..1217805(+) (comGD) [Staphylococcus sp. SB1-57]
MAKQLQIKAYNFIEMLMVLFILSILLVCTISSKNLLTISKSNDDMNINQLITQINYLKSKAIGEKQSITLIFYNQSSNIK
VIEEHGNKYHIKIRDGKIVKITKINLITFDKNGNINHFGSLDIKMKHSIYKVIFHIEKGRIRYTKL

Nucleotide


Download         Length: 441 bp        

>NTDB_id=541606 JX000_RS06060 WP_049425186.1 1217365..1217805(+) (comGD) [Staphylococcus sp. SB1-57]
ATGGCGAAGCAATTGCAAATTAAAGCATACAATTTTATAGAAATGTTAATGGTGTTATTTATTTTGTCGATTTTATTGGT
ATGTACTATAAGTAGTAAAAATCTATTAACGATATCAAAGAGCAATGATGACATGAATATCAATCAACTCATCACTCAAA
TAAATTATTTAAAATCAAAAGCAATTGGCGAAAAACAATCAATCACTTTAATATTTTATAATCAGTCTTCTAACATTAAA
GTTATAGAAGAACACGGTAATAAATATCACATAAAAATAAGAGATGGAAAGATCGTAAAAATAACAAAAATAAACCTAAT
TACCTTTGATAAAAATGGTAATATTAATCATTTTGGTTCGCTAGACATTAAAATGAAACATTCAATATATAAAGTTATAT
TTCATATTGAGAAAGGACGAATAAGGTATACCAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

48.322

100

0.493
  comGD Staphylococcus aureus N315

48.322

100

0.493