Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   JWR96_RS00180 Genome accession   NZ_CP070856
Coordinates   41902..42201 (+) Length   99 a.a.
NCBI ID   WP_021037947.1    Uniprot ID   A0AAX4AJK4
Organism   Lactococcus cremoris strain GR0507     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 42282..45132 41902..42201 flank 81


Gene organization within MGE regions


Location: 41902..45132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWR96_RS00180 (JWR96_00180) comGG 41902..42201 (+) 300 WP_021037947.1 competence type IV pilus minor pilin ComGG Machinery gene
  JWR96_RS00185 (JWR96_00185) - 42282..42719 (+) 438 WP_011677180.1 zinc-dependent MarR family transcriptional regulator -
  JWR96_RS00190 (JWR96_00190) - 42716..43558 (+) 843 WP_011677179.1 zinc ABC transporter substrate-binding protein -
  JWR96_RS00195 (JWR96_00195) - 43760..45132 (+) 1373 WP_185753013.1 IS3 family transposase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11269.27 Da        Isoelectric Point: 9.8236

>NTDB_id=541049 JWR96_RS00180 WP_021037947.1 41902..42201(+) (comGG) [Lactococcus cremoris strain GR0507]
MVLLLIFSLFLQFYLQKQVLTAQQLKIEKERLTAELMVSLALKKDLKTSGQLNFDCGNLTYKLLTDLSADSTSGGQTVSN
KTYCFDVRLKDGRIFQIKK

Nucleotide


Download         Length: 300 bp        

>NTDB_id=541049 JWR96_RS00180 WP_021037947.1 41902..42201(+) (comGG) [Lactococcus cremoris strain GR0507]
TTGGTTTTACTGCTAATTTTTTCTTTATTTCTACAGTTTTATTTGCAAAAACAGGTGCTTACAGCTCAGCAATTGAAAAT
AGAAAAGGAGCGACTGACAGCCGAATTAATGGTTTCATTGGCTCTTAAAAAGGATTTGAAAACGAGTGGTCAACTTAATT
TTGATTGTGGAAATTTAACTTATAAATTACTGACAGATCTGTCAGCTGATTCAACTAGCGGTGGTCAAACTGTTAGTAAT
AAAACTTATTGTTTTGATGTTCGGCTTAAGGATGGAAGAATTTTTCAAATAAAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Lactococcus lactis subsp. cremoris KW2

100

100

1