Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   JWR96_RS00170 Genome accession   NZ_CP070856
Coordinates   41173..41469 (+) Length   98 a.a.
NCBI ID   WP_043736169.1    Uniprot ID   A0AAX4A863
Organism   Lactococcus cremoris strain GR0507     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 42282..45132 41173..41469 flank 813


Gene organization within MGE regions


Location: 41173..45132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWR96_RS00170 (JWR96_00170) comGE 41173..41469 (+) 297 WP_043736169.1 competence type IV pilus minor pilin ComGE Machinery gene
  JWR96_RS00175 (JWR96_00175) comGF 41432..41878 (+) 447 WP_043736171.1 competence type IV pilus minor pilin ComGF Machinery gene
  JWR96_RS00180 (JWR96_00180) comGG 41902..42201 (+) 300 WP_021037947.1 competence type IV pilus minor pilin ComGG Machinery gene
  JWR96_RS00185 (JWR96_00185) - 42282..42719 (+) 438 WP_011677180.1 zinc-dependent MarR family transcriptional regulator -
  JWR96_RS00190 (JWR96_00190) - 42716..43558 (+) 843 WP_011677179.1 zinc ABC transporter substrate-binding protein -
  JWR96_RS00195 (JWR96_00195) - 43760..45132 (+) 1373 WP_185753013.1 IS3 family transposase -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10902.58 Da        Isoelectric Point: 5.8109

>NTDB_id=541047 JWR96_RS00170 WP_043736169.1 41173..41469(+) (comGE) [Lactococcus cremoris strain GR0507]
MENIKRKSIKGYILLESLISMALLSFLVTFLLSALTNSRQQEAQENQQIESLNVAQMAIESQLTELSLNGSVIKIRQGST
ATIISDHGKEILRLEAQN

Nucleotide


Download         Length: 297 bp        

>NTDB_id=541047 JWR96_RS00170 WP_043736169.1 41173..41469(+) (comGE) [Lactococcus cremoris strain GR0507]
GTGGAAAATATAAAAAGAAAATCAATTAAGGGATATATACTTCTTGAGAGCCTAATTAGTATGGCATTATTGAGCTTTTT
GGTCACTTTTCTCTTAAGTGCTCTTACTAATTCTCGTCAGCAAGAGGCACAAGAAAATCAACAAATTGAGTCCTTAAATG
TAGCTCAGATGGCAATAGAAAGTCAGTTGACGGAACTATCGTTAAATGGTTCTGTTATAAAAATAAGACAAGGTTCGACT
GCAACCATTATTAGTGACCATGGAAAGGAAATTTTGCGACTTGAAGCTCAAAATTAG

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Lactococcus lactis subsp. cremoris KW2

97.959

100

0.98