Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   JWR96_RS00165 Genome accession   NZ_CP070856
Coordinates   40770..41201 (+) Length   143 a.a.
NCBI ID   WP_050750513.1    Uniprot ID   A0AAX4AH55
Organism   Lactococcus cremoris strain GR0507     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 35770..46201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWR96_RS00150 (JWR96_00150) comGA 38511..39491 (+) 981 WP_043736167.1 competence type IV pilus ATPase ComGA Machinery gene
  JWR96_RS00155 (JWR96_00155) comGB 39391..40416 (+) 1026 WP_052206589.1 competence type IV pilus assembly protein ComGB Machinery gene
  JWR96_RS00160 (JWR96_00160) comGC 40460..40759 (+) 300 WP_052206590.1 competence type IV pilus major pilin ComGC Machinery gene
  JWR96_RS00165 (JWR96_00165) comGD 40770..41201 (+) 432 WP_050750513.1 competence type IV pilus minor pilin ComGD Machinery gene
  JWR96_RS00170 (JWR96_00170) comGE 41173..41469 (+) 297 WP_043736169.1 competence type IV pilus minor pilin ComGE Machinery gene
  JWR96_RS00175 (JWR96_00175) comGF 41432..41878 (+) 447 WP_043736171.1 competence type IV pilus minor pilin ComGF Machinery gene
  JWR96_RS00180 (JWR96_00180) comGG 41902..42201 (+) 300 WP_021037947.1 competence type IV pilus minor pilin ComGG Machinery gene
  JWR96_RS00185 (JWR96_00185) - 42282..42719 (+) 438 WP_011677180.1 zinc-dependent MarR family transcriptional regulator -
  JWR96_RS00190 (JWR96_00190) - 42716..43558 (+) 843 WP_011677179.1 zinc ABC transporter substrate-binding protein -
  JWR96_RS00195 (JWR96_00195) - 43760..45132 (+) 1373 WP_185753013.1 IS3 family transposase -
  JWR96_RS00200 (JWR96_00200) - 45224..45961 (+) 738 WP_011836039.1 metal ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16575.44 Da        Isoelectric Point: 8.3095

>NTDB_id=541046 JWR96_RS00165 WP_050750513.1 40770..41201(+) (comGD) [Lactococcus cremoris strain GR0507]
MTRIKMNSAISMIRAFTLLESLLVLLIVSFITLFFSAELTQTVHLFKGELFVLQFENLYKISQENAALQSSSENLESKNG
KLIYENKEIDIPKEVEMAEFLIKFDEKGENSSLQKIKVYLPYEKKTILYQMEMGSGKYKKKIN

Nucleotide


Download         Length: 432 bp        

>NTDB_id=541046 JWR96_RS00165 WP_050750513.1 40770..41201(+) (comGD) [Lactococcus cremoris strain GR0507]
ATGACCAGAATAAAAATGAACAGCGCAATTTCGATGATTAGAGCCTTCACATTGTTAGAATCTCTACTGGTATTACTTAT
TGTCTCTTTTATCACCCTCTTTTTCTCAGCAGAATTGACTCAAACAGTGCATTTATTTAAGGGAGAACTCTTTGTTTTAC
AGTTTGAAAATTTATACAAAATAAGTCAGGAGAATGCAGCGCTACAAAGTAGTTCAGAAAATTTAGAAAGTAAAAATGGG
AAATTGATTTATGAAAACAAAGAGATAGATATTCCCAAAGAGGTTGAAATGGCAGAATTTTTGATTAAATTTGATGAGAA
AGGGGAGAACTCAAGTTTACAGAAAATCAAAGTTTATTTACCTTATGAGAAGAAAACAATTTTATATCAAATGGAGATGG
GGAGTGGAAAATATAAAAAGAAAATCAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

97.902

100

0.979
  comYD Streptococcus mutans UA140

39.394

92.308

0.364
  comYD Streptococcus mutans UA159

39.394

92.308

0.364