Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   JTM80_RS05310 Genome accession   NZ_CP070366
Coordinates   1278307..1278672 (+) Length   121 a.a.
NCBI ID   WP_068508027.1    Uniprot ID   A0A6M8BD67
Organism   Thermoleptolyngbya sp. PKUAC-SCTB121     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1273307..1283672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTM80_RS05300 hmpF 1273546..1275306 (-) 1761 WP_172354589.1 pilus motility taxis protein HmpF -
  JTM80_RS05305 - 1276734..1278047 (+) 1314 WP_205370732.1 response regulator -
  JTM80_RS05310 pilH 1278307..1278672 (+) 366 WP_068508027.1 response regulator transcription factor Machinery gene
  JTM80_RS05315 - 1278708..1279238 (+) 531 WP_172354585.1 chemotaxis protein CheW -
  JTM80_RS05320 - 1279327..1282233 (+) 2907 WP_205370733.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13368.41 Da        Isoelectric Point: 4.6926

>NTDB_id=539480 JTM80_RS05310 WP_068508027.1 1278307..1278672(+) (pilH) [Thermoleptolyngbya sp. PKUAC-SCTB121]
MSRVLVVEDSVTQREMITDLLKGSGLDVTVASDGVEALEQIEGHSPDLVVLDIVMPRMNGYEVCRQIKANPKTQNIPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=539480 JTM80_RS05310 WP_068508027.1 1278307..1278672(+) (pilH) [Thermoleptolyngbya sp. PKUAC-SCTB121]
ATGAGTAGAGTTTTGGTTGTAGAAGACAGCGTGACCCAGCGGGAAATGATTACTGACCTGCTAAAAGGCAGCGGACTCGA
TGTTACCGTAGCTAGCGATGGTGTAGAAGCGCTAGAACAAATAGAAGGCCATAGCCCTGACCTAGTGGTTCTCGACATCG
TAATGCCCCGCATGAACGGATACGAGGTCTGCCGACAAATTAAAGCCAATCCCAAAACTCAAAACATCCCCGTTGTGATG
TGTTCCTCTAAGGGGGAAGAATTCGATCGCTATTGGGGCATGAAGCAGGGTGCAGATGCATACATTGCAAAGCCGTTCCA
ACCAACCGAGCTAGTGGGCACGGTCAAGCAATTGCTGCGGGGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M8BD67

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

75.207

100

0.752
  pilG Acinetobacter baumannii strain A118

43.478

95.041

0.413
  micA Streptococcus pneumoniae Cp1015

40

99.174

0.397
  chpA Acinetobacter baumannii strain A118

41.379

95.868

0.397
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

36.364

100

0.364