Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   JVX94_RS17300 Genome accession   NZ_CP070345
Coordinates   3402089..3402775 (+) Length   228 a.a.
NCBI ID   WP_197197641.1    Uniprot ID   -
Organism   Bacillus sp. PDNC022     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3397089..3407775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX94_RS17275 (JVX94_17275) degS 3397241..3398416 (+) 1176 WP_003213166.1 sensor histidine kinase Regulator
  JVX94_RS17280 (JVX94_17280) degU 3398481..3399170 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  JVX94_RS17285 (JVX94_17285) - 3399389..3400231 (+) 843 WP_095409677.1 DegV family protein -
  JVX94_RS17290 (JVX94_17290) comFA 3400352..3401749 (+) 1398 WP_275891453.1 DEAD/DEAH box helicase Machinery gene
  JVX94_RS17295 (JVX94_17295) - 3401799..3402092 (+) 294 WP_197197640.1 late competence development ComFB family protein -
  JVX94_RS17300 (JVX94_17300) comFC 3402089..3402775 (+) 687 WP_197197641.1 ComF family protein Machinery gene
  JVX94_RS17305 (JVX94_17305) - 3402832..3403251 (+) 420 WP_039181808.1 TIGR03826 family flagellar region protein -
  JVX94_RS17310 (JVX94_17310) flgM 3403331..3403594 (+) 264 WP_095409676.1 flagellar biosynthesis anti-sigma factor FlgM -
  JVX94_RS17315 (JVX94_17315) - 3403613..3404095 (+) 483 WP_144472023.1 flagellar protein FlgN -
  JVX94_RS17320 (JVX94_17320) flgK 3404111..3405631 (+) 1521 WP_197197643.1 flagellar hook-associated protein FlgK -
  JVX94_RS17325 (JVX94_17325) flgL 3405641..3406549 (+) 909 WP_144472025.1 flagellar hook-associated protein FlgL -
  JVX94_RS17330 (JVX94_17330) - 3406596..3407174 (+) 579 WP_197197644.1 DUF6470 family protein -
  JVX94_RS17335 (JVX94_17335) fliW 3407203..3407637 (+) 435 WP_075611996.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26120.69 Da        Isoelectric Point: 9.8093

>NTDB_id=539316 JVX94_RS17300 WP_197197641.1 3402089..3402775(+) (comFC) [Bacillus sp. PDNC022]
MICPICDGHFVPAFTWKSLLLLNDERLCVACKNQLVKIERPICPTCGRAQSNDQMCQDCDRWNERIDSTKVLIKNRSVYI
YNELMKDVLARFKFRGDTALVELFKRDVQAAFKRSFCIKDPLLIPIPLSNERLKERGFNQSVIIASLIGKPILQPLMKIH
QSKQSKKKKNERLDQKGLFQIKQTDVIVQRDIILVDDIYTTGATIYDAARILKDAGAKSVSSFTLIRS

Nucleotide


Download         Length: 687 bp        

>NTDB_id=539316 JVX94_RS17300 WP_197197641.1 3402089..3402775(+) (comFC) [Bacillus sp. PDNC022]
TTGATTTGCCCGATTTGCGATGGACATTTTGTGCCTGCTTTTACATGGAAATCATTACTTCTATTAAATGATGAGCGTCT
TTGTGTAGCATGTAAGAATCAATTAGTAAAGATTGAGCGTCCTATTTGTCCAACCTGCGGAAGAGCGCAGTCAAATGATC
AAATGTGCCAAGACTGTGATAGATGGAATGAACGCATTGATTCTACTAAAGTCCTTATAAAAAACAGGTCAGTTTATATC
TACAACGAGTTGATGAAAGATGTCCTTGCCCGCTTTAAATTTCGGGGTGATACGGCTTTAGTTGAGCTGTTTAAACGAGA
TGTACAAGCAGCATTTAAACGTTCCTTCTGCATAAAAGACCCATTGCTCATCCCGATCCCTTTAAGTAATGAAAGACTAA
AAGAAAGAGGGTTTAATCAGTCCGTTATCATCGCTTCCTTGATAGGTAAGCCGATATTGCAGCCACTCATGAAAATACAT
CAAAGTAAGCAGTCCAAAAAAAAGAAAAATGAACGCCTAGATCAAAAAGGTTTGTTTCAAATAAAGCAAACAGATGTGAT
TGTTCAAAGAGATATTATATTAGTTGATGATATCTATACAACGGGAGCAACCATTTATGATGCGGCAAGAATTTTGAAAG
ACGCCGGTGCCAAAAGTGTTTCTTCTTTTACGTTGATACGTAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(161-226)

Double zinc ribbon domain (DZR_2)

(3-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

48.261

100

0.487
  comFC/cflB Streptococcus mitis NCTC 12261

36.245

100

0.364
  comFC/cflB Streptococcus mitis SK321

36.245

100

0.364