Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   JVX94_RS17280 Genome accession   NZ_CP070345
Coordinates   3398481..3399170 (+) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. PDNC022     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3393481..3404170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX94_RS17260 (JVX94_17260) - 3394174..3395241 (+) 1068 WP_048237563.1 MraY family glycosyltransferase -
  JVX94_RS17265 (JVX94_17265) - 3395277..3396368 (-) 1092 WP_095409678.1 LCP family protein -
  JVX94_RS17270 (JVX94_17270) - 3396353..3397021 (-) 669 WP_012011434.1 YigZ family protein -
  JVX94_RS17275 (JVX94_17275) degS 3397241..3398416 (+) 1176 WP_003213166.1 sensor histidine kinase Regulator
  JVX94_RS17280 (JVX94_17280) degU 3398481..3399170 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  JVX94_RS17285 (JVX94_17285) - 3399389..3400231 (+) 843 WP_095409677.1 DegV family protein -
  JVX94_RS17290 (JVX94_17290) comFA 3400352..3401749 (+) 1398 WP_275891453.1 DEAD/DEAH box helicase Machinery gene
  JVX94_RS17295 (JVX94_17295) - 3401799..3402092 (+) 294 WP_197197640.1 late competence development ComFB family protein -
  JVX94_RS17300 (JVX94_17300) comFC 3402089..3402775 (+) 687 WP_197197641.1 ComF family protein Machinery gene
  JVX94_RS17305 (JVX94_17305) - 3402832..3403251 (+) 420 WP_039181808.1 TIGR03826 family flagellar region protein -
  JVX94_RS17310 (JVX94_17310) flgM 3403331..3403594 (+) 264 WP_095409676.1 flagellar biosynthesis anti-sigma factor FlgM -
  JVX94_RS17315 (JVX94_17315) - 3403613..3404095 (+) 483 WP_144472023.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=539314 JVX94_RS17280 WP_008348273.1 3398481..3399170(+) (degU) [Bacillus sp. PDNC022]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=539314 JVX94_RS17280 WP_008348273.1 3398481..3399170(+) (degU) [Bacillus sp. PDNC022]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTAAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACACTCATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAACGGTTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996