Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   JVX94_RS17290 Genome accession   NZ_CP070345
Coordinates   3400352..3401749 (+) Length   465 a.a.
NCBI ID   WP_275891453.1    Uniprot ID   -
Organism   Bacillus sp. PDNC022     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3395352..3406749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX94_RS17270 (JVX94_17270) - 3396353..3397021 (-) 669 WP_012011434.1 YigZ family protein -
  JVX94_RS17275 (JVX94_17275) degS 3397241..3398416 (+) 1176 WP_003213166.1 sensor histidine kinase Regulator
  JVX94_RS17280 (JVX94_17280) degU 3398481..3399170 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  JVX94_RS17285 (JVX94_17285) - 3399389..3400231 (+) 843 WP_095409677.1 DegV family protein -
  JVX94_RS17290 (JVX94_17290) comFA 3400352..3401749 (+) 1398 WP_275891453.1 DEAD/DEAH box helicase Machinery gene
  JVX94_RS17295 (JVX94_17295) - 3401799..3402092 (+) 294 WP_197197640.1 late competence development ComFB family protein -
  JVX94_RS17300 (JVX94_17300) comFC 3402089..3402775 (+) 687 WP_197197641.1 ComF family protein Machinery gene
  JVX94_RS17305 (JVX94_17305) - 3402832..3403251 (+) 420 WP_039181808.1 TIGR03826 family flagellar region protein -
  JVX94_RS17310 (JVX94_17310) flgM 3403331..3403594 (+) 264 WP_095409676.1 flagellar biosynthesis anti-sigma factor FlgM -
  JVX94_RS17315 (JVX94_17315) - 3403613..3404095 (+) 483 WP_144472023.1 flagellar protein FlgN -
  JVX94_RS17320 (JVX94_17320) flgK 3404111..3405631 (+) 1521 WP_197197643.1 flagellar hook-associated protein FlgK -
  JVX94_RS17325 (JVX94_17325) flgL 3405641..3406549 (+) 909 WP_144472025.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53271.09 Da        Isoelectric Point: 9.8214

>NTDB_id=539315 JVX94_RS17290 WP_275891453.1 3400352..3401749(+) (comFA) [Bacillus sp. PDNC022]
MNMDKAMELKRHLYSRHLLTVETRCAQSNLDWLEEKGLVNRTPAIERKADGFTCYRCGVSHKRYFAHSPCEECQKDCVYC
RSCIMMGKATECGFLYEWTGPKMVEAYRAELTWQGELSKGQKRASERMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMSVCIATPRTDVVLELEPRLRKAFQGITIAVLYGGSSQRFQIAPLVIATTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKAMRKNGGVRIYLSATPSKKMTREVSRGKLEAIKIPLRFHQQPLPVPTFQWIGHWKKKLKKKQLPSKMMNWMQ
RHIANKRRVLLFVPSIAVMKKATELLREHSLNVEEVSADDPDRKQKVQHFRDYAYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKKHIIKMNDTAAKEFSEKQCGFN

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=539315 JVX94_RS17290 WP_275891453.1 3400352..3401749(+) (comFA) [Bacillus sp. PDNC022]
TTGAACATGGACAAAGCAATGGAACTAAAGCGGCATCTGTATTCACGCCATCTGCTCACTGTTGAAACAAGGTGCGCACA
GTCCAATTTAGATTGGCTGGAGGAGAAAGGCTTAGTTAATCGAACACCTGCCATTGAGAGGAAAGCAGATGGTTTTACAT
GCTACCGGTGTGGTGTATCACACAAGCGGTACTTTGCTCACTCTCCATGTGAAGAGTGTCAAAAGGATTGTGTGTACTGT
AGGTCATGCATCATGATGGGAAAAGCAACTGAATGTGGATTTCTTTATGAATGGACGGGTCCAAAAATGGTAGAAGCATA
TCGAGCCGAATTAACATGGCAGGGAGAGTTGTCTAAAGGACAAAAAAGAGCATCAGAAAGAATGATCGAAGCTATTAAAA
ACAAATTTGATCTACTCGTCTGGGCGGTTTGTGGGGCAGGGAAAACGGAAGTGCTTTTTCATGGAATTGAATATGCGTTA
AACCAAGGAATGAGTGTCTGTATTGCGACACCTAGAACAGATGTTGTGCTTGAACTTGAACCACGGCTTAGAAAAGCATT
TCAAGGGATAACAATAGCCGTACTTTATGGAGGCAGTTCACAAAGGTTTCAAATAGCACCGCTTGTAATCGCTACAACCC
ACCAGCTGATGAGATACAAAAATGCATTTGATGTGCTCATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAA
CGTCTCCAATTTGCTGTTCTAAAGGCGATGAGAAAGAACGGAGGGGTTAGGATATATTTAAGTGCGACACCCTCTAAAAA
AATGACGAGAGAGGTTTCTCGTGGAAAACTGGAAGCGATAAAAATTCCTCTGCGTTTTCACCAGCAACCATTACCCGTCC
CGACCTTTCAATGGATCGGACATTGGAAAAAGAAATTAAAAAAGAAGCAGCTTCCTTCTAAAATGATGAATTGGATGCAG
AGACATATTGCAAATAAGAGAAGAGTTTTACTTTTTGTTCCTTCAATTGCTGTCATGAAGAAGGCAACGGAGCTTCTTCG
AGAACACTCCTTAAACGTAGAGGAAGTATCTGCCGATGATCCAGATAGGAAACAAAAAGTTCAGCACTTTAGAGATTACG
CATACGATGTACTAGTTACAACCACTATTTTAGAAAGAGGCGTAACCATTCCGAATGTTCAAGTGGGGGTACTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATTTCTGGAAGAGTGGGCAGACATCCCGATTATTGTACAGGAGA
TGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCATAAAAATGAATGATACGGCTG
CAAAAGAGTTTTCTGAAAAACAGTGTGGCTTCAACTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-265)

Helicase conserved C-terminal domain (Helicase_C)

(324-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.974

98.065

0.51