Detailed information NTG0539246

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: JVX96_RS01000
• Genome accession: NZ_CP070343
• Coordinates: 207598..208881 (+)
• Length: 427 a.a.
• NCBI ID: WP_106936897.1
• Uniprot ID: A0AA92RCJ5
• Organism: Variovorax sp. PDNC026
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 202598..213881

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JVX96_RS00980 (JVX96_00980)	-	203089..203724 (-)	636	WP_106936901.1	LysE/ArgO family amino acid transporter	-
JVX96_RS00985 (JVX96_00985)	-	203803..204717 (+)	915	WP_106936900.1	LysR family transcriptional regulator ArgP	-
JVX96_RS00990 (JVX96_00990)	-	204723..206039 (-)	1317	WP_234382966.1	pitrilysin family protein	-
JVX96_RS00995 (JVX96_00995)	-	206120..207568 (-)	1449	WP_106936898.1	pitrilysin family protein	-
JVX96_RS01000 (JVX96_01000)	pilA	207598..208881 (+)	1284	WP_106936897.1	signal recognition particle-docking protein FtsY	Machinery gene
JVX96_RS01005 (JVX96_01005)	-	208976..209980 (-)	1005	WP_159053692.1	hypothetical protein	-
JVX96_RS01010 (JVX96_01010)	-	210175..211941 (-)	1767	WP_106937681.1	hybrid sensor histidine kinase/response regulator	-
JVX96_RS01015 (JVX96_01015)	-	211988..212713 (-)	726	WP_106936894.1	response regulator transcription factor	-
JVX96_RS01020 (JVX96_01020)	-	212899..213363 (+)	465	WP_106936893.1	Mpo1-like protein	-

Sequence

Protein

• Length: 427 a.a.
• Molecular weight: 43784.66 Da
• Isoelectric Point: 5.8742

>NTDB_id=539246 JVX96_RS01000 WP_106936897.1 207598..208881(+) (pilA) [Variovorax sp. PDNC026]
MFSFFKKKPPADAPVAPAPPPAAAPAPAPEPAPTRSVFSPSSWFGSKPAAEEAPAVPAPAPAPAPTPAPAPAPAPAPAAP
APVVAAPAPAPVVAAPPAALAPVFAPAPAPAPAPVPAPSPVASAPAVPERKSWLDKLKTGLRKTGTGIQAVFVNAQIDDA
LYEELESALLMADTGVKATEYLLEDLRGRVKRQMATDAAQVKVLLAEAIADLLKPLEKPLVIGQFTPTVIMVAGVNGAGK
TTSIGKLTKHLATEGASVLLAAADTFRAAAREQLLVWADRNTVEIVSNEGGDPSAVSFDAVNAGKARGKDVVLVDTAGRL
PTQLHLMDELKKIKRVVTKADATAPHEVLLVIDGNTGQNALAQVKAFDETLGLTGLIVTKLDGTAKGGVLCAIARDRPIP
VYFIGVGEKLEDLETFDAREFAQALLG

Nucleotide

• Length: 1284 bp

>NTDB_id=539246 JVX96_RS01000 WP_106936897.1 207598..208881(+) (pilA) [Variovorax sp. PDNC026]
ATGTTCAGTTTCTTCAAGAAAAAACCGCCTGCCGATGCCCCGGTCGCGCCGGCGCCCCCTCCGGCCGCCGCGCCAGCGCC
CGCCCCGGAGCCCGCGCCCACGCGCTCGGTGTTCTCGCCTTCGAGCTGGTTCGGCTCGAAGCCTGCGGCGGAGGAAGCGC
CTGCCGTGCCTGCGCCTGCGCCGGCCCCTGCTCCAACGCCCGCTCCGGCACCAGCACCTGCACCGGCACCGGCCGCCCCT
GCGCCGGTCGTCGCGGCGCCGGCGCCAGCCCCGGTGGTGGCCGCTCCGCCTGCGGCACTGGCGCCCGTCTTCGCTCCCGC
GCCAGCTCCGGCGCCTGCCCCCGTCCCGGCTCCCTCCCCGGTCGCCTCGGCGCCGGCGGTCCCCGAGCGCAAGAGCTGGC
TCGACAAGCTCAAGACCGGCCTGCGCAAGACCGGCACCGGCATCCAGGCCGTCTTCGTCAACGCCCAGATCGACGACGCA
CTCTATGAAGAGCTCGAGTCCGCCCTGCTGATGGCCGACACCGGCGTCAAGGCGACCGAGTACCTGCTCGAAGACCTGCG
CGGCCGCGTCAAGCGCCAGATGGCCACCGACGCGGCCCAGGTCAAGGTCCTGCTGGCCGAGGCGATCGCCGACCTGCTCA
AGCCGCTGGAGAAGCCGCTGGTCATCGGCCAGTTCACGCCCACCGTCATCATGGTGGCCGGCGTCAACGGCGCGGGCAAG
ACCACGTCCATCGGCAAGCTCACCAAGCACCTGGCCACCGAAGGCGCCTCGGTGCTGCTGGCCGCGGCCGACACCTTCCG
GGCTGCCGCACGCGAGCAATTGCTGGTCTGGGCCGACCGCAACACGGTCGAGATCGTGAGCAACGAGGGCGGCGACCCCT
CCGCCGTGAGCTTCGACGCGGTGAATGCCGGCAAGGCGCGCGGCAAGGACGTGGTGCTGGTCGACACGGCCGGCCGCCTG
CCGACGCAGCTGCACCTGATGGACGAGCTCAAGAAGATCAAGCGCGTCGTCACCAAGGCCGACGCCACGGCGCCGCACGA
GGTGCTGCTGGTCATCGACGGCAACACCGGCCAGAACGCGCTTGCGCAGGTCAAGGCATTCGACGAGACGCTGGGCCTCA
CGGGCCTGATCGTCACCAAGCTCGACGGCACGGCCAAGGGCGGCGTGCTGTGCGCCATTGCGCGCGATAGGCCGATCCCG
GTGTACTTCATCGGCGTAGGCGAGAAGCTGGAAGACCTGGAGACCTTCGACGCGCGCGAGTTCGCGCAGGCGCTGCTCGG
CTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (227-427)

• SRP54-type protein, helical bundle domain (SRP54_N) (145-208)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.618	100	0.494