Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG/cglG   Type   Machinery gene
Locus tag   LK450_RS08285 Genome accession   NZ_CP085939
Coordinates   1673467..1673793 (+) Length   108 a.a.
NCBI ID   WP_018543596.1    Uniprot ID   -
Organism   Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1668467..1678793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK450_RS08250 (LK450_08250) - 1669758..1670123 (+) 366 WP_003032307.1 DUF1033 family protein -
  LK450_RS08255 (LK450_08255) comGA 1670193..1671134 (+) 942 WP_003032308.1 competence type IV pilus ATPase ComGA Machinery gene
  LK450_RS08260 (LK450_08260) comGB 1671076..1672098 (+) 1023 WP_037582505.1 competence type IV pilus assembly protein ComGB Machinery gene
  LK450_RS08265 (LK450_08265) comGC 1672095..1672412 (+) 318 WP_003026997.1 competence type IV pilus major pilin ComGC Machinery gene
  LK450_RS08270 (LK450_08270) comGD 1672372..1672800 (+) 429 WP_050791305.1 competence type IV pilus minor pilin ComGD Machinery gene
  LK450_RS08275 (LK450_08275) comGE/cglE 1672772..1673065 (+) 294 WP_003032294.1 competence type IV pilus minor pilin ComGE Machinery gene
  LK450_RS08280 (LK450_08280) comGF/cglF 1673049..1673486 (+) 438 WP_003032293.1 competence type IV pilus minor pilin ComGF Machinery gene
  LK450_RS08285 (LK450_08285) comGG/cglG 1673467..1673793 (+) 327 WP_018543596.1 competence type IV pilus minor pilin ComGG Machinery gene
  LK450_RS08290 (LK450_08290) comGH 1673878..1674831 (+) 954 WP_003032282.1 class I SAM-dependent methyltransferase Machinery gene
  LK450_RS08295 (LK450_08295) - 1674878..1676077 (+) 1200 WP_003032291.1 acetate kinase -
  LK450_RS08300 (LK450_08300) glmS 1676466..1678280 (+) 1815 WP_022524764.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12701.68 Da        Isoelectric Point: 10.6290

>NTDB_id=539251 LK450_RS08285 WP_018543596.1 1673467..1673793(+) (comGG/cglG) [Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569]
MWKQRVKAGIMLYALFITAVFSLLLQFYLHRQTANHRNFALNKEGTQAYTMALLANKNSKQREFDKGHVQDQKSEKELIL
TVTMKTGRRYQFSFPLEKTSQNNDKLDK

Nucleotide


Download         Length: 327 bp        

>NTDB_id=539251 LK450_RS08285 WP_018543596.1 1673467..1673793(+) (comGG/cglG) [Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569]
GTGTGGAAACAAAGAGTTAAAGCAGGTATTATGCTCTATGCCCTTTTTATAACAGCTGTCTTTAGCTTGCTTTTGCAATT
TTACCTTCATCGGCAAACTGCTAATCACAGGAATTTTGCTTTGAACAAAGAAGGAACACAGGCTTATACAATGGCTCTTC
TAGCAAATAAAAATTCTAAGCAAAGAGAATTTGATAAAGGGCATGTCCAAGACCAAAAGAGTGAGAAAGAGCTCATCCTG
ACCGTAACAATGAAGACTGGTCGCCGTTATCAATTTTCTTTTCCGCTTGAGAAGACCAGCCAAAACAATGACAAACTAGA
CAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis NCTC 12261

44.554

93.519

0.417
  comGG/cglG Streptococcus mitis SK321

44.554

93.519

0.417
  comGG/cglG Streptococcus pneumoniae Rx1

43

92.593

0.398
  comGG/cglG Streptococcus pneumoniae D39

43

92.593

0.398
  comGG/cglG Streptococcus pneumoniae R6

43

92.593

0.398
  comGG/cglG Streptococcus pneumoniae TIGR4

43

92.593

0.398
  comGG Streptococcus mutans UA140

36.697

100

0.37
  comGG Streptococcus mutans UA159

36.697

100

0.37