Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   JQN73_RS00985 Genome accession   NZ_CP070304
Coordinates   230585..231094 (-) Length   169 a.a.
NCBI ID   WP_304607800.1    Uniprot ID   -
Organism   Glaciimonas sp. PAMC28666     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 225585..236094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN73_RS00965 (JQN73_00965) moaD 226021..226278 (-) 258 WP_205321248.1 molybdopterin converting factor subunit 1 -
  JQN73_RS00970 (JQN73_00970) glp 226365..227615 (-) 1251 WP_205321249.1 gephyrin-like molybdotransferase Glp -
  JQN73_RS00975 (JQN73_00975) thrC 227934..229394 (-) 1461 WP_205321250.1 threonine synthase -
  JQN73_RS00980 (JQN73_00980) tfpZ 229620..230363 (-) 744 WP_205321251.1 TfpX/TfpZ family type IV pilin accessory protein -
  JQN73_RS00985 (JQN73_00985) pilA2 230585..231094 (-) 510 WP_304607800.1 pilin Machinery gene
  JQN73_RS00990 (JQN73_00990) gmk 231616..232260 (+) 645 WP_205323099.1 guanylate kinase -
  JQN73_RS00995 (JQN73_00995) rpoZ 232341..232544 (+) 204 WP_168052254.1 DNA-directed RNA polymerase subunit omega -
  JQN73_RS01000 (JQN73_01000) - 232578..234851 (+) 2274 WP_205321252.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  JQN73_RS01005 (JQN73_01005) - 234981..235442 (-) 462 WP_205321253.1 DUF1178 family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 17088.80 Da        Isoelectric Point: 10.2327

>NTDB_id=539063 JQN73_RS00985 WP_304607800.1 230585..231094(-) (pilA2) [Glaciimonas sp. PAMC28666]
MNKSIRRMSTKAQKGFTLIELMIVVAIIGILAAVALPAYQNYLIRARVTEGLTLADSAKTAVSENAMAGQAFASGWTAPN
ATANVNSIAITAATGEITITYSAKVAPVATATLVLAPRDGTNAGGALVVGTPPATGSITWNCNSSTVAAGNLGAKGAILP
TFVPANCRL

Nucleotide


Download         Length: 510 bp        

>NTDB_id=539063 JQN73_RS00985 WP_304607800.1 230585..231094(-) (pilA2) [Glaciimonas sp. PAMC28666]
ATGAATAAATCTATCCGTCGCATGTCGACCAAAGCGCAAAAGGGTTTTACTCTGATTGAATTGATGATCGTTGTGGCGAT
TATCGGTATTTTGGCAGCAGTGGCTCTTCCTGCTTATCAAAACTATTTGATCCGTGCCCGCGTAACAGAGGGTTTAACGC
TTGCTGATTCAGCTAAAACAGCTGTCAGTGAAAATGCGATGGCAGGGCAGGCATTTGCTTCAGGTTGGACCGCTCCAAAT
GCGACGGCCAACGTGAACAGTATCGCAATTACCGCAGCCACTGGCGAAATAACAATTACCTACTCTGCTAAAGTTGCTCC
GGTAGCGACAGCGACATTGGTGTTGGCACCACGTGACGGTACGAATGCCGGTGGTGCGCTTGTTGTTGGTACGCCTCCAG
CCACCGGTTCAATTACATGGAACTGCAACTCCTCGACCGTAGCTGCTGGTAACTTAGGTGCTAAAGGTGCGATTTTGCCA
ACGTTCGTACCAGCAAATTGCCGTCTGTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(45-168)

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

52.147

96.45

0.503
  pilA2 Legionella pneumophila strain ERS1305867

51.534

96.45

0.497
  pilA Ralstonia pseudosolanacearum GMI1000

45.402

100

0.467
  comP Acinetobacter baylyi ADP1

41.875

94.675

0.396
  pilE Neisseria gonorrhoeae strain FA1090

38.095

99.408

0.379
  pilE Neisseria gonorrhoeae MS11

38.65

96.45

0.373