Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D1098_RS03440 Genome accession   NZ_CP069797
Coordinates   742111..742635 (-) Length   174 a.a.
NCBI ID   WP_005607715.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain K17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 737111..747635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1098_RS03415 (D1098_03435) - 737299..738387 (+) 1089 WP_005618943.1 hypothetical protein -
  D1098_RS03420 (D1098_03440) - 738384..738812 (+) 429 WP_005618945.1 three component ABC system middle component -
  D1098_RS03425 (D1098_03445) - 738809..740800 (+) 1992 WP_011848466.1 DUF3732 domain-containing protein -
  D1098_RS03430 - 740964..741050 (-) 87 Protein_658 alcohol dehydrogenase -
  D1098_RS03435 (D1098_03450) - 741124..741942 (+) 819 WP_009874892.1 GIY-YIG nuclease family protein -
  D1098_RS03440 (D1098_03455) ssb 742111..742635 (-) 525 WP_005607715.1 single-stranded DNA-binding protein Machinery gene
  D1098_RS03445 (D1098_03460) uvrA 742786..745614 (+) 2829 WP_009874891.1 excinuclease ABC subunit UvrA -
  D1098_RS03450 (D1098_03465) - 745753..745965 (-) 213 WP_005597221.1 hypothetical protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19187.96 Da        Isoelectric Point: 4.9839

>NTDB_id=536720 D1098_RS03440 WP_005607715.1 742111..742635(-) (ssb) [Actinobacillus pleuropneumoniae strain K17]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVAGQYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLGGRNQGGDFGGNQGGWGNSAPAPQQSYNQGNSGYGYDQTASRSAPQAAKPAQ
AEPPMDNFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=536720 D1098_RS03440 WP_005607715.1 742111..742635(-) (ssb) [Actinobacillus pleuropneumoniae strain K17]
ATGGCAGGTATTAATAAAGTTATCATCGTGGGCAATTTAGGTAACGATCCTGAAATGCGCACCATGCCAAACGGCGAAGC
GGTTGCAAATATTAGCGTAGCAACCAGTGAAAGTTGGACGGATAAAAATACGGGCGAACGCCGTGAAGTAACCGAATGGC
ACCGTATCGTATTCTACCGTCGCCAAGCGGAAGTTGCCGGTCAATACTTACGTAAAGGCTCACAAGTTTATGTTGAAGGC
CGTTTAAAAACACGTAAATGGCAAGACCAAAACGGTCAAGATCGTTACACTACCGAAATCCAAGGTGACGTTTTACAAAT
GTTAGGCGGACGTAACCAAGGCGGCGATTTCGGCGGTAACCAAGGCGGTTGGGGAAATTCAGCACCTGCACCACAACAAA
GTTACAACCAAGGTAACAGCGGTTACGGCTATGACCAAACAGCAAGTCGCTCTGCTCCACAAGCAGCGAAACCTGCTCAA
GCAGAACCACCAATGGATAACTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

76.243

100

0.793
  ssb Vibrio cholerae strain A1552

59.322

100

0.603
  ssb Neisseria meningitidis MC58

47.399

99.425

0.471
  ssb Neisseria gonorrhoeae MS11

47.399

99.425

0.471
  ssb Latilactobacillus sakei subsp. sakei 23K

34.807

100

0.362
  ssbA Bacillus subtilis subsp. subtilis str. 168

36

100

0.362