Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D1099_RS04640 Genome accession   NZ_CP069796
Coordinates   976295..976819 (+) Length   174 a.a.
NCBI ID   WP_005607715.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae serovar 6 str. Femo     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 971295..981819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1099_RS04630 (D1099_04605) - 972965..973177 (+) 213 WP_005597221.1 hypothetical protein -
  D1099_RS04635 (D1099_04610) uvrA 973316..976144 (-) 2829 WP_005607713.1 excinuclease ABC subunit UvrA -
  D1099_RS04640 (D1099_04615) ssb 976295..976819 (+) 525 WP_005607715.1 single-stranded DNA-binding protein Machinery gene
  D1099_RS04645 (D1099_04620) - 976983..977801 (-) 819 WP_005607717.1 GIY-YIG nuclease family protein -
  D1099_RS04650 - 977877..977960 (+) 84 Protein_911 alcohol dehydrogenase -
  D1099_RS04655 (D1099_04625) - 978124..980115 (-) 1992 WP_005601050.1 DUF3732 domain-containing protein -
  D1099_RS04660 (D1099_04630) - 980112..980540 (-) 429 WP_005620687.1 three component ABC system middle component -
  D1099_RS04665 (D1099_04635) - 980537..981625 (-) 1089 WP_005618943.1 hypothetical protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19187.96 Da        Isoelectric Point: 4.9839

>NTDB_id=536684 D1099_RS04640 WP_005607715.1 976295..976819(+) (ssb) [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVAGQYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLGGRNQGGDFGGNQGGWGNSAPAPQQSYNQGNSGYGYDQTASRSAPQAAKPAQ
AEPPMDNFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=536684 D1099_RS04640 WP_005607715.1 976295..976819(+) (ssb) [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
ATGGCAGGTATTAATAAAGTTATCATCGTGGGCAATTTAGGTAACGATCCTGAAATGCGCACCATGCCAAACGGCGAAGC
GGTTGCAAATATTAGCGTAGCAACCAGTGAAAGTTGGACGGATAAAAATACGGGCGAACGCCGTGAAGTAACCGAATGGC
ACCGTATCGTATTCTACCGTCGCCAAGCGGAAGTTGCCGGTCAATACTTACGTAAAGGCTCACAAGTTTATGTTGAAGGC
CGTTTAAAAACACGTAAATGGCAAGACCAAAACGGTCAAGACCGTTATACCACCGAAATCCAAGGTGACGTTTTACAAAT
GTTAGGCGGACGTAACCAAGGCGGCGATTTCGGCGGTAACCAAGGCGGTTGGGGAAATTCAGCACCTGCACCACAACAAA
GTTATAACCAAGGTAACAGCGGTTACGGTTACGATCAAACAGCAAGTCGCTCTGCTCCACAAGCAGCGAAACCTGCTCAA
GCAGAACCACCAATGGATAACTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

76.243

100

0.793
  ssb Vibrio cholerae strain A1552

59.322

100

0.603
  ssb Neisseria meningitidis MC58

47.399

99.425

0.471
  ssb Neisseria gonorrhoeae MS11

47.399

99.425

0.471
  ssb Latilactobacillus sakei subsp. sakei 23K

34.807

100

0.362
  ssbA Bacillus subtilis subsp. subtilis str. 168

36

100

0.362