Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   I6J29_RS07170 Genome accession   NZ_CP069510
Coordinates   1500384..1501529 (-) Length   381 a.a.
NCBI ID   WP_005705992.1    Uniprot ID   A0AAE6JR78
Organism   Haemophilus parahaemolyticus strain FDAARGOS_1199     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1495384..1506529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J29_RS07145 (I6J29_07145) - 1496073..1497740 (-) 1668 WP_039863082.1 anaerobic C4-dicarboxylate transporter -
  I6J29_RS07150 (I6J29_07150) rplA 1497953..1498642 (-) 690 WP_005705958.1 50S ribosomal protein L1 -
  I6J29_RS07155 (I6J29_07155) rplK 1498647..1499075 (-) 429 WP_005542594.1 50S ribosomal protein L11 -
  I6J29_RS07160 (I6J29_07160) nusG 1499275..1499844 (-) 570 WP_005705963.1 transcription termination/antitermination protein NusG -
  I6J29_RS07165 (I6J29_07165) secE 1499856..1500263 (-) 408 WP_005705960.1 preprotein translocase subunit SecE -
  I6J29_RS07170 (I6J29_07170) dprA 1500384..1501529 (-) 1146 WP_005705992.1 DNA-processing protein DprA Machinery gene
  I6J29_RS07175 (I6J29_07175) def 1501630..1502142 (+) 513 WP_005705982.1 peptide deformylase -
  I6J29_RS07180 (I6J29_07180) rfaD 1502652..1503578 (+) 927 WP_005705937.1 ADP-glyceromanno-heptose 6-epimerase -
  I6J29_RS07185 (I6J29_07185) - 1503621..1504160 (-) 540 WP_005705984.1 hypothetical protein -
  I6J29_RS07190 (I6J29_07190) fumC 1504334..1505728 (-) 1395 WP_005705943.1 class II fumarate hydratase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 41980.28 Da        Isoelectric Point: 4.8758

>NTDB_id=535228 I6J29_RS07170 WP_005705992.1 1500384..1501529(-) (dprA) [Haemophilus parahaemolyticus strain FDAARGOS_1199]
MHLVSLLKLLQVPQIGAQKIARLLAEIDFDQFCQFDKQQLRQIGWNEKQIQRWFQPDQAWINAALSWAEQGGNRILTLFD
DDYPFLLRQISTAPPVLFVKGSVESLSLPQIAMVGSRDFSHYGEYWAGYFASELVKNGFAVTSGLAIGIDGFCHQRAVAE
KGTTIAVLGSGLAQVYPARHKKLAEQIIETGGALMSEFFPNQPPIAENFPRRNRIISGLSLGTLVVEATINSGSLITARY
ALEQGREVFALPNAVQNPYSAGCHKLIKEGALLTESIEDILQAVQYQLQREPMQAELFEAQTQAVDSVPRFSKSAAVPVA
KALPEMTACQQQIFEQISFEPIAIDDIAKAVEMDVSMLLVELLNLELLGVVKSVNGGYVLA

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=535228 I6J29_RS07170 WP_005705992.1 1500384..1501529(-) (dprA) [Haemophilus parahaemolyticus strain FDAARGOS_1199]
ATGCATCTAGTTTCTCTGCTCAAATTATTGCAAGTGCCACAAATCGGCGCTCAAAAAATCGCTCGCCTGTTGGCGGAAAT
CGATTTCGACCAATTTTGCCAATTCGACAAACAGCAACTTCGGCAAATTGGTTGGAACGAAAAGCAAATCCAGCGTTGGT
TTCAGCCGGATCAGGCGTGGATTAATGCGGCACTTTCGTGGGCAGAGCAGGGAGGCAACCGCATTCTGACCTTGTTTGAT
GATGATTATCCCTTTTTGCTGCGTCAAATCAGCACCGCTCCGCCCGTATTATTCGTGAAAGGTTCGGTAGAAAGTTTGAG
CTTACCGCAAATTGCGATGGTGGGAAGCCGTGATTTTTCCCATTATGGCGAATACTGGGCAGGCTATTTTGCCTCGGAAT
TAGTTAAAAATGGCTTTGCGGTCACAAGCGGCTTGGCGATTGGTATTGACGGCTTTTGTCATCAGCGAGCGGTGGCAGAA
AAGGGCACCACAATTGCTGTACTTGGCTCTGGCTTGGCACAGGTTTACCCAGCACGACACAAAAAATTAGCAGAGCAGAT
AATCGAGACTGGTGGGGCATTGATGTCGGAATTTTTCCCTAACCAGCCACCGATTGCCGAGAATTTCCCGCGACGAAATC
GCATTATCAGTGGACTTTCGTTAGGCACATTAGTGGTGGAAGCAACAATTAACAGCGGATCGCTCATTACTGCCCGTTAT
GCTTTGGAACAAGGTCGGGAGGTGTTTGCTCTACCAAATGCAGTGCAAAATCCTTATTCTGCGGGTTGCCATAAGCTCAT
TAAAGAAGGGGCATTATTGACGGAAAGCATTGAAGACATTTTGCAAGCAGTACAATATCAGTTGCAAAGAGAGCCTATGC
AAGCAGAGCTGTTTGAAGCTCAAACGCAAGCGGTGGATTCTGTGCCACGTTTTTCAAAATCGGCAGCCGTGCCAGTTGCA
AAGGCTTTGCCAGAAATGACCGCTTGCCAGCAGCAGATTTTCGAACAGATTAGCTTTGAGCCGATAGCGATTGATGATAT
TGCCAAAGCGGTAGAGATGGATGTGTCGATGTTGTTGGTTGAACTTCTAAACTTGGAATTGTTAGGTGTGGTGAAATCGG
TAAATGGCGGTTATGTTCTTGCTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-273)

DprA winged helix domain (DprA_WH)

(321-377)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

73.491

100

0.735
  dprA Haemophilus influenzae Rd KW20

51.156

90.814

0.465
  dprA Vibrio campbellii strain DS40M4

45.407

100

0.454
  dprA Vibrio cholerae strain A1552

43.636

100

0.441
  dprA Legionella pneumophila strain ERS1305867

38.12

100

0.383
  dprA Neisseria meningitidis strain C311

41.04

90.814

0.373
  dprA Neisseria meningitidis MC58

41.04

90.814

0.373