Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | I6K04_RS15145 | Genome accession | NZ_CP069442 |
| Coordinates | 3238612..3239748 (+) | Length | 378 a.a. |
| NCBI ID | WP_011133735.1 | Uniprot ID | - |
| Organism | Chromobacterium violaceum strain FDAARGOS_1274 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3233612..3244748
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K04_RS15115 (I6K04_15115) | dksA | 3234151..3234561 (-) | 411 | WP_011133729.1 | RNA polymerase-binding protein DksA | - |
| I6K04_RS15120 (I6K04_15120) | - | 3234845..3235150 (-) | 306 | WP_011133730.1 | c-type cytochrome | - |
| I6K04_RS15125 (I6K04_15125) | - | 3235230..3235811 (-) | 582 | WP_045051079.1 | YggT family protein | - |
| I6K04_RS15130 (I6K04_15130) | proC | 3235821..3236624 (-) | 804 | WP_081527360.1 | pyrroline-5-carboxylate reductase | - |
| I6K04_RS15135 (I6K04_15135) | - | 3236679..3237374 (-) | 696 | WP_204086480.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| I6K04_RS15140 (I6K04_15140) | pilT | 3237512..3238549 (+) | 1038 | WP_011133734.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| I6K04_RS15145 (I6K04_15145) | pilU | 3238612..3239748 (+) | 1137 | WP_011133735.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| I6K04_RS15150 (I6K04_15150) | - | 3239774..3241387 (+) | 1614 | WP_139795212.1 | response regulator | - |
| I6K04_RS15155 (I6K04_15155) | - | 3241422..3243035 (+) | 1614 | WP_052942147.1 | response regulator | - |
| I6K04_RS15160 (I6K04_15160) | - | 3243035..3243556 (+) | 522 | WP_081527362.1 | 2'-5' RNA ligase family protein | - |
| I6K04_RS15165 (I6K04_15165) | - | 3243563..3244348 (-) | 786 | WP_081527363.1 | TIGR00266 family protein | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42305.49 Da Isoelectric Point: 6.0195
>NTDB_id=534739 I6K04_RS15145 WP_011133735.1 3238612..3239748(+) (pilU) [Chromobacterium violaceum strain FDAARGOS_1274]
MEKDQASKFIHDLLKHATGKNASDIFIAAEFPPAMKIDGKITPVAPQALTALQSKELVRAVMNDRQTEEFEAKKEANFAI
NPPGVGRFRVSAFVQQGMVGMVLRKINTEIPTFDQLNLPEVLKDIALIKRGLVIFVGGTGSGKSTSLAALVDWRNSNNQD
HIITIEDPIEYVHTHKKSIVTQREIGVDTENWEVALKNTLRQAPDVILMGEIRDRETMAYGLQFAETGHLCLATLHANNA
NQALDRILNFFPEERHQQVLMDLSLNMRAIISQRLVPHKSGRGRVAAVEILLNSPLVSDMVFKGEIAGLKEVMGRSREAG
MQTFDQSLFELYEAELITYEDALRNADSINDLRLRIKLYSESARNRDPLEGIDHLDIV
MEKDQASKFIHDLLKHATGKNASDIFIAAEFPPAMKIDGKITPVAPQALTALQSKELVRAVMNDRQTEEFEAKKEANFAI
NPPGVGRFRVSAFVQQGMVGMVLRKINTEIPTFDQLNLPEVLKDIALIKRGLVIFVGGTGSGKSTSLAALVDWRNSNNQD
HIITIEDPIEYVHTHKKSIVTQREIGVDTENWEVALKNTLRQAPDVILMGEIRDRETMAYGLQFAETGHLCLATLHANNA
NQALDRILNFFPEERHQQVLMDLSLNMRAIISQRLVPHKSGRGRVAAVEILLNSPLVSDMVFKGEIAGLKEVMGRSREAG
MQTFDQSLFELYEAELITYEDALRNADSINDLRLRIKLYSESARNRDPLEGIDHLDIV
Nucleotide
Download Length: 1137 bp
>NTDB_id=534739 I6K04_RS15145 WP_011133735.1 3238612..3239748(+) (pilU) [Chromobacterium violaceum strain FDAARGOS_1274]
ATGGAAAAAGACCAGGCCTCCAAATTCATCCACGACCTGCTCAAGCATGCGACGGGAAAGAACGCCTCCGACATCTTCAT
CGCCGCCGAATTTCCGCCGGCGATGAAGATAGACGGCAAGATCACGCCGGTGGCGCCGCAGGCGCTGACCGCCCTGCAGA
GCAAGGAACTGGTGCGCGCGGTGATGAACGACCGCCAGACCGAGGAGTTCGAGGCGAAGAAGGAAGCCAACTTCGCCATC
AACCCGCCCGGCGTCGGCCGTTTCCGCGTCAGCGCCTTCGTCCAGCAGGGCATGGTGGGCATGGTGCTGCGCAAGATCAA
CACCGAGATCCCCACCTTCGACCAGCTCAACCTGCCCGAGGTGCTGAAGGACATCGCGCTGATCAAGCGCGGCCTGGTGA
TCTTCGTCGGCGGCACCGGCTCCGGCAAGTCCACCTCGCTGGCGGCGCTGGTGGACTGGCGCAACAGCAACAACCAGGAC
CACATCATCACGATCGAAGACCCGATCGAGTACGTGCACACCCACAAGAAGTCCATCGTCACCCAACGCGAGATCGGCGT
GGACACCGAGAACTGGGAGGTCGCGCTGAAGAACACGCTGCGCCAGGCGCCGGACGTGATCCTGATGGGGGAGATCCGCG
ACCGCGAAACCATGGCCTACGGCCTGCAGTTCGCCGAAACCGGCCACCTGTGCCTGGCCACGCTGCACGCCAACAACGCC
AACCAGGCGCTGGACCGCATCCTCAACTTCTTCCCCGAAGAGCGCCACCAGCAAGTGCTGATGGACCTGTCGCTGAACAT
GCGCGCCATCATTTCGCAGCGGCTGGTGCCGCACAAGTCCGGCCGCGGCCGGGTGGCGGCGGTGGAGATCCTGCTCAACA
GCCCGCTGGTGTCGGACATGGTGTTCAAGGGCGAGATCGCCGGGCTGAAGGAGGTGATGGGACGCTCGCGCGAGGCCGGC
ATGCAGACTTTCGACCAATCGCTGTTCGAACTGTACGAGGCCGAGCTGATCACTTACGAGGATGCGCTGCGCAACGCCGA
CTCCATCAACGACCTGCGCCTGAGAATCAAGCTGTACAGCGAGAGCGCCCGCAACCGGGACCCGCTGGAAGGCATAGACC
ACCTGGATATCGTCTGA
ATGGAAAAAGACCAGGCCTCCAAATTCATCCACGACCTGCTCAAGCATGCGACGGGAAAGAACGCCTCCGACATCTTCAT
CGCCGCCGAATTTCCGCCGGCGATGAAGATAGACGGCAAGATCACGCCGGTGGCGCCGCAGGCGCTGACCGCCCTGCAGA
GCAAGGAACTGGTGCGCGCGGTGATGAACGACCGCCAGACCGAGGAGTTCGAGGCGAAGAAGGAAGCCAACTTCGCCATC
AACCCGCCCGGCGTCGGCCGTTTCCGCGTCAGCGCCTTCGTCCAGCAGGGCATGGTGGGCATGGTGCTGCGCAAGATCAA
CACCGAGATCCCCACCTTCGACCAGCTCAACCTGCCCGAGGTGCTGAAGGACATCGCGCTGATCAAGCGCGGCCTGGTGA
TCTTCGTCGGCGGCACCGGCTCCGGCAAGTCCACCTCGCTGGCGGCGCTGGTGGACTGGCGCAACAGCAACAACCAGGAC
CACATCATCACGATCGAAGACCCGATCGAGTACGTGCACACCCACAAGAAGTCCATCGTCACCCAACGCGAGATCGGCGT
GGACACCGAGAACTGGGAGGTCGCGCTGAAGAACACGCTGCGCCAGGCGCCGGACGTGATCCTGATGGGGGAGATCCGCG
ACCGCGAAACCATGGCCTACGGCCTGCAGTTCGCCGAAACCGGCCACCTGTGCCTGGCCACGCTGCACGCCAACAACGCC
AACCAGGCGCTGGACCGCATCCTCAACTTCTTCCCCGAAGAGCGCCACCAGCAAGTGCTGATGGACCTGTCGCTGAACAT
GCGCGCCATCATTTCGCAGCGGCTGGTGCCGCACAAGTCCGGCCGCGGCCGGGTGGCGGCGGTGGAGATCCTGCTCAACA
GCCCGCTGGTGTCGGACATGGTGTTCAAGGGCGAGATCGCCGGGCTGAAGGAGGTGATGGGACGCTCGCGCGAGGCCGGC
ATGCAGACTTTCGACCAATCGCTGTTCGAACTGTACGAGGCCGAGCTGATCACTTACGAGGATGCGCTGCGCAACGCCGA
CTCCATCAACGACCTGCGCCTGAGAATCAAGCTGTACAGCGAGAGCGCCCGCAACCGGGACCCGCTGGAAGGCATAGACC
ACCTGGATATCGTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
60.857 |
92.593 |
0.563 |
| pilU | Acinetobacter baylyi ADP1 |
54.918 |
96.825 |
0.532 |
| pilU | Vibrio cholerae strain A1552 |
52.991 |
92.857 |
0.492 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
44.51 |
89.153 |
0.397 |
| pilT | Pseudomonas aeruginosa PAK |
40.653 |
89.153 |
0.362 |