Detailed information NTG0533233

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: JQR77_RS08770
• Genome accession: NZ_CP069275
• Coordinates: 1706753..1707853 (-)
• Length: 366 a.a.
• NCBI ID: WP_120764773.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain EG007
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1701753..1712853

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JQR77_RS08725	-	1702078..1702353 (-)	276	WP_011681681.1	hypothetical protein	-
JQR77_RS08730 (JQR77_08735)	-	1702365..1702562 (-)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
JQR77_RS08735 (JQR77_08740)	-	1702811..1704004 (-)	1194	WP_084825660.1	acetate kinase	-
JQR77_RS08740 (JQR77_08745)	comYH	1704060..1705016 (-)	957	WP_023909974.1	class I SAM-dependent methyltransferase	Machinery gene
JQR77_RS08745 (JQR77_08750)	comGG	1705061..1705378 (-)	318	WP_023909975.1	competence type IV pilus minor pilin ComGG	-
JQR77_RS08750 (JQR77_08755)	comYF	1705356..1705793 (-)	438	WP_084825661.1	competence type IV pilus minor pilin ComGF	Machinery gene
JQR77_RS08755 (JQR77_08760)	comGE	1705777..1706070 (-)	294	WP_023909978.1	competence type IV pilus minor pilin ComGE	-
JQR77_RS08760 (JQR77_08765)	comYD	1706042..1706470 (-)	429	WP_171815055.1	competence type IV pilus minor pilin ComGD	Machinery gene
JQR77_RS08765 (JQR77_08770)	comYC	1706430..1706756 (-)	327	WP_023909980.1	competence type IV pilus major pilin ComGC	Machinery gene
JQR77_RS08770 (JQR77_08775)	comYB	1706753..1707853 (-)	1101	WP_120764773.1	competence type IV pilus assembly protein ComGB	Machinery gene
JQR77_RS08775 (JQR77_08780)	comYA	1707735..1708676 (-)	942	WP_014622005.1	competence type IV pilus ATPase ComGA	Machinery gene
JQR77_RS08780 (JQR77_08785)	-	1708757..1709119 (-)	363	WP_023909982.1	DUF1033 family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 41876.03 Da
• Isoelectric Point: 10.1377

>NTDB_id=533233 JQR77_RS08770 WP_120764773.1 1706753..1707853(-) (comYB) [Streptococcus thermophilus strain EG007]
MPEKISKTIRRPTGISSWKVWLNKDVSLRGISKGKKLKISQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKETSLSLM
KESLIRGDRLYQMLALVGFSDNIVTQISLADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKNNWAVQLVQIFPQLFFVSLCGLLVLGLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGVDLLDLVALMQEQKSKLFRELGADLEEALMLGQSFPERIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QNFFNRLNKATTFVQPLIFVIVAVVIVMIYVAMLLPMYQNMEGMMS

Nucleotide

• Length: 1101 bp

>NTDB_id=533233 JQR77_RS08770 WP_120764773.1 1706753..1707853(-) (comYB) [Streptococcus thermophilus strain EG007]
TTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAGGTTTGGTTAAACAAGGATGTCTC
ACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAGTCAGCAAGTTAAGGTTATCCAGCTCTTCAAACAACTTTTAA
AGGCCGGTTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGCTGAAAGAAACATCCTTGTCCCTTATG
AAAGAGAGTTTAATACGCGGTGATAGGTTGTATCAGATGTTAGCGTTAGTGGGGTTTTCGGACAATATTGTTACTCAGAT
TTCTCTTGCTGACAAGCACGGTAATCTTCTAGGGAGTCTAACAAAGATTGAAACCTATATGCTTCGTATGACAAAGGTTC
GCAAGAAACTCATGGAGGTGGCGACTTATCCCATACTACTTCTGGGTTTTCTGATTCTGATTATGCTAGGACTTAAAAAT
TATCTTCTACCCCAACTCTTAGAGGGTGATGGTAAGAATAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTTTT
TTTTGTGAGTTTGTGTGGACTCCTTGTGTTGGGTTTAATTCTCTATCTATGGGTGAAACGACAGTCAGCCCTTGTTTTTT
ATAGGCGAATGGCCAAAATCCCTTTTATTGGTCAGACAGTAAGGCTTTACACGACCGCCTATTATGCTAGGGAATGGGGA
AATTTATTAGGTCAAGGCGTTGATTTGCTAGATTTGGTGGCTCTTATGCAAGAGCAAAAGTCTAAACTCTTCCGTGAGCT
GGGAGCCGATTTGGAAGAAGCCCTGATGCTGGGACAGAGTTTTCCTGAACGTATTGCCAGTCATCCGTTTTTTACTAAGG
AGCTCTCACTAATTATTGCTTATGGGGAGGCCAATGCGAGGTTGGGCTATGAGTTGGAAGTTTATGCCGAGGAGGTTTGG
CAAAACTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCAGTTGTGATTGT
AATGATCTATGTAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (236-356)

• Type II secretion system (T2SS), protein F (T2SSF) (51-164)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	54.678	93.443	0.511
comYB	Streptococcus mutans UA159	54.678	93.443	0.511
comYB	Streptococcus gordonii str. Challis substr. CH1	51.17	93.443	0.478
comGB/cglB	Streptococcus mitis NCTC 12261	50.453	90.437	0.456
comGB/cglB	Streptococcus mitis SK321	49.697	90.164	0.448
comGB/cglB	Streptococcus pneumoniae Rx1	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae D39	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae R6	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae TIGR4	49.695	89.617	0.445
comGB	Lactococcus lactis subsp. cremoris KW2	45.758	90.164	0.413