Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LLNCDO700_RS07210 Genome accession   NZ_CP069179
Coordinates   1416503..1417153 (+) Length   216 a.a.
NCBI ID   WP_259691957.1    Uniprot ID   -
Organism   Lactococcus cremoris strain NCDO700     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1411503..1422153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLNCDO700_RS07185 (LLNCDO700_07180) - 1412015..1412782 (-) 768 WP_011835328.1 5'-nucleotidase -
  LLNCDO700_RS07190 (LLNCDO700_07185) - 1412892..1413911 (-) 1020 WP_011835329.1 DUF475 domain-containing protein -
  LLNCDO700_RS07195 (LLNCDO700_07190) - 1413977..1414477 (-) 501 WP_259691955.1 VanZ family protein -
  LLNCDO700_RS07200 (LLNCDO700_07195) - 1414519..1415154 (-) 636 WP_011835331.1 YigZ family protein -
  LLNCDO700_RS07205 (LLNCDO700_07200) comFA 1415211..1416503 (+) 1293 WP_259691956.1 DEAD/DEAH box helicase Machinery gene
  LLNCDO700_RS07210 (LLNCDO700_07205) comFC 1416503..1417153 (+) 651 WP_259691957.1 ComF family protein Machinery gene
  LLNCDO700_RS07215 (LLNCDO700_07210) - 1417212..1417790 (-) 579 WP_011835334.1 nucleotidyltransferase family protein -
  LLNCDO700_RS07220 (LLNCDO700_07215) - 1417807..1418262 (-) 456 WP_011676094.1 diacylglycerol kinase family protein -
  LLNCDO700_RS07225 (LLNCDO700_07220) ybeY 1418246..1418734 (-) 489 WP_011835335.1 rRNA maturation RNase YbeY -
  LLNCDO700_RS07230 (LLNCDO700_07225) - 1418964..1419452 (-) 489 WP_259687581.1 NUDIX hydrolase -
  LLNCDO700_RS07235 (LLNCDO700_07230) - 1419522..1420490 (-) 969 WP_011835337.1 PhoH family protein -
  LLNCDO700_RS07240 (LLNCDO700_07235) - 1420564..1422096 (-) 1533 WP_011835338.1 Nramp family divalent metal transporter -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25388.73 Da        Isoelectric Point: 9.9382

>NTDB_id=532740 LLNCDO700_RS07210 WP_259691957.1 1416503..1417153(+) (comFC) [Lactococcus cremoris strain NCDO700]
MQTCLLCSRIIKQTLTFSEFFLLKNKRNLICNKCQSLFKKIPNERCPRCSKSNSKGICADCLRWEEKGIIVNHQAIFIYN
QEMKDYFSLYKFMRDYRLHEVFDSYFKNLSKKIPLVPIPVSPKRLQERGFNQVTAFLKDRTYLDLLEKEDTVSQSSLNRE
GRLSTTNPFKLKEGEKIPKKIILIDDIYTTGTTFYHAIKTLKKANPIEITTFSLCR

Nucleotide


Download         Length: 651 bp        

>NTDB_id=532740 LLNCDO700_RS07210 WP_259691957.1 1416503..1417153(+) (comFC) [Lactococcus cremoris strain NCDO700]
ATGCAAACATGTCTGCTTTGTTCCAGAATTATCAAACAAACACTCACTTTTAGTGAATTCTTTTTACTAAAGAATAAGAG
AAATTTAATATGCAATAAATGCCAATCACTGTTTAAAAAAATTCCTAACGAACGTTGTCCTCGTTGCTCTAAATCTAACT
CTAAAGGTATATGTGCTGACTGTCTCAGGTGGGAAGAAAAAGGAATCATTGTTAATCATCAGGCAATTTTTATTTATAAC
CAAGAAATGAAGGATTACTTTAGTCTTTACAAATTTATGAGAGATTATCGATTACACGAAGTCTTCGATTCCTATTTTAA
AAATTTGTCCAAAAAAATTCCTCTGGTTCCTATTCCGGTTTCTCCTAAAAGATTACAAGAAAGAGGGTTTAACCAAGTAA
CAGCTTTTCTAAAAGATAGAACTTATCTTGATTTGCTTGAAAAAGAGGATACTGTCAGCCAATCAAGTCTTAATCGCGAG
GGACGTTTATCAACTACCAATCCTTTTAAGTTGAAAGAGGGTGAAAAAATACCCAAAAAAATCATTTTGATTGATGATAT
TTATACAACTGGAACTACTTTTTATCATGCTATAAAAACCTTAAAGAAAGCTAATCCGATTGAAATTACAACTTTCTCAC
TCTGCCGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

97.761

62.037

0.606
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

100

0.495
  comFC/cflB Streptococcus pneumoniae Rx1

47.248

100

0.477
  comFC/cflB Streptococcus pneumoniae D39

47.248

100

0.477
  comFC/cflB Streptococcus pneumoniae R6

47.248

100

0.477
  comFC/cflB Streptococcus pneumoniae TIGR4

47.248

100

0.477
  comFC/cflB Streptococcus mitis SK321

47.248

100

0.477