Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JNE38_RS30360 Genome accession   NZ_CP069127
Coordinates   6143058..6143537 (-) Length   159 a.a.
NCBI ID   WP_092271174.1    Uniprot ID   A0A1I3YB50
Organism   Brevibacillus choshinensis strain HPD31-SP3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6138058..6148537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE38_RS30340 (JNE38_30340) rplI 6139377..6139820 (-) 444 WP_203357816.1 50S ribosomal protein L9 -
  JNE38_RS30345 (JNE38_30345) - 6139847..6141784 (-) 1938 WP_203354720.1 DHH family phosphoesterase -
  JNE38_RS30350 (JNE38_30350) - 6141789..6142697 (-) 909 WP_203354721.1 DUF2232 domain-containing protein -
  JNE38_RS30355 (JNE38_30355) rpsR 6142783..6143013 (-) 231 WP_005831740.1 30S ribosomal protein S18 -
  JNE38_RS30360 (JNE38_30360) ssbA 6143058..6143537 (-) 480 WP_092271174.1 single-stranded DNA-binding protein Machinery gene
  JNE38_RS30365 (JNE38_30365) rpsF 6143567..6143854 (-) 288 WP_092271171.1 30S ribosomal protein S6 -
  JNE38_RS30370 (JNE38_30370) ychF 6143997..6145097 (-) 1101 WP_203354722.1 redox-regulated ATPase YchF -
  JNE38_RS30375 (JNE38_30375) - 6145287..6145910 (+) 624 WP_203354723.1 SDR family oxidoreductase -
  JNE38_RS30380 (JNE38_30380) pepF 6145983..6147896 (-) 1914 WP_203354724.1 oligoendopeptidase F -
  JNE38_RS30385 (JNE38_30385) - 6148258..6148344 (+) 87 WP_016739383.1 YjcZ family sporulation protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17194.05 Da        Isoelectric Point: 5.2753

>NTDB_id=532457 JNE38_RS30360 WP_092271174.1 6143058..6143537(-) (ssbA) [Brevibacillus choshinensis strain HPD31-SP3]
MNKVILIGNLTKDPELRYTPNGVAVATFTVAINRPRTNQAGEREADFINIVAWQKLADLCASYLRKGRQAAIEGRLQTRS
YDNKEGKRVYVTEVVAENVQFLGGRGNENGDNSGYDPGPGFGGGNKPSGGGQRNDFDPFGDPFASAGKPINISDDDLPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=532457 JNE38_RS30360 WP_092271174.1 6143058..6143537(-) (ssbA) [Brevibacillus choshinensis strain HPD31-SP3]
ATGAATAAAGTCATTCTCATCGGCAACCTGACAAAAGATCCTGAACTTCGTTACACGCCAAATGGCGTTGCCGTTGCTAC
GTTTACTGTGGCGATCAATCGTCCCCGCACCAACCAAGCGGGCGAGAGAGAAGCCGACTTCATTAATATTGTCGCTTGGC
AAAAGCTGGCTGACCTGTGTGCAAGCTATTTGCGCAAGGGCAGACAAGCCGCCATCGAAGGACGCCTTCAAACGCGCTCC
TACGACAATAAAGAAGGAAAACGCGTATACGTGACAGAGGTAGTTGCAGAGAACGTTCAATTTTTGGGCGGGCGAGGCAA
CGAAAACGGAGATAATTCAGGCTACGATCCGGGTCCAGGCTTCGGCGGTGGCAACAAACCATCCGGCGGAGGCCAGAGAA
ACGACTTTGATCCGTTTGGTGATCCCTTCGCGAGTGCTGGCAAGCCTATCAACATTTCGGATGATGACTTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I3YB50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.179

100

0.579
  ssb Latilactobacillus sakei subsp. sakei 23K

44.571

100

0.491
  ssb Vibrio cholerae strain A1552

36.757

100

0.428
  ssb Neisseria gonorrhoeae MS11

36.416

100

0.396
  ssb Neisseria meningitidis MC58

35.838

100

0.39
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.39