Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   JOA01_RS09815 Genome accession   NZ_CP069079
Coordinates   1930088..1931269 (+) Length   393 a.a.
NCBI ID   WP_217374443.1    Uniprot ID   -
Organism   Streptococcus parasuis strain BS26     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1925088..1936269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOA01_RS09785 (JOA01_09790) - 1925660..1928239 (+) 2580 WP_217374439.1 YfhO family protein -
  JOA01_RS09805 (JOA01_09810) - 1928668..1929330 (-) 663 WP_254451613.1 YoaK family protein -
  JOA01_RS09810 (JOA01_09815) rlmH 1929358..1929837 (-) 480 WP_130554909.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  JOA01_RS09815 (JOA01_09820) htrA 1930088..1931269 (+) 1182 WP_217374443.1 S1C family serine protease Regulator
  JOA01_RS09820 (JOA01_09825) spo0J 1931332..1932090 (+) 759 WP_217374445.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 41147.89 Da        Isoelectric Point: 4.2563

>NTDB_id=532198 JOA01_RS09815 WP_217374443.1 1930088..1931269(+) (htrA) [Streptococcus parasuis strain BS26]
MKKLLKFVILFVVGFLGGIGGYYFASSTLTQGNSTSNQANTTSVSNVQYSNETSTTKAVEKVQDAVVSVINYQTQSSDSL
SSIFGNIESSDELAVAGEGSGVIYKKDGDTAYIVTNNHVISGAEKIDILLASGEKLSGELVGADTYSDIAVIKIAADKVT
TIAEFANSDTIKVGETAIAIGSPLGSVYANTVTQGIISSLSRTVTSQTEDGQTISTNAIQTDAAINPGNSGGPLINIQGQ
VIGINSSKITSSSVSSSGVAIEGMGFAIPSNDVVQIINQLETNGKVTRPALGVQMVNLTDLSTSQLEKAGLANTDLTSGV
LIVSTQPGLPADGKFEPYDVIIEIDGETIENKSDLQSELYKHQIGDTITVTYYRNNKKMTVDIKLTHSTDDLS

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=532198 JOA01_RS09815 WP_217374443.1 1930088..1931269(+) (htrA) [Streptococcus parasuis strain BS26]
ATGAAAAAATTATTGAAATTTGTTATTTTGTTTGTTGTTGGATTTTTAGGAGGAATTGGTGGGTATTACTTTGCTTCATC
AACTCTGACTCAAGGAAATTCTACTTCAAATCAAGCAAATACAACCAGTGTAAGCAATGTTCAATATAGCAACGAAACTT
CCACCACTAAAGCTGTGGAAAAAGTTCAAGATGCTGTTGTCTCCGTTATCAATTATCAAACTCAATCATCGGATAGCCTC
AGTTCTATTTTTGGTAACATTGAAAGTTCAGATGAGCTAGCTGTTGCTGGAGAAGGTTCAGGTGTTATTTATAAAAAAGA
TGGTGATACAGCATATATTGTTACAAACAACCACGTAATTTCAGGTGCTGAAAAAATCGATATACTTTTGGCTTCTGGAG
AAAAGCTTAGCGGAGAACTCGTAGGTGCAGATACTTATTCAGACATTGCTGTTATCAAAATTGCTGCAGATAAAGTGACC
ACTATTGCTGAATTTGCTAATTCAGACACAATTAAAGTTGGAGAAACTGCGATTGCAATTGGTAGCCCATTAGGAAGTGT
CTATGCAAATACAGTAACCCAGGGGATTATTTCTAGTCTCAGTCGTACAGTAACTTCACAAACAGAAGATGGCCAAACAA
TCTCAACAAATGCTATCCAGACTGATGCAGCCATTAACCCAGGTAACTCAGGTGGACCACTTATCAATATTCAAGGACAA
GTTATCGGTATCAACTCAAGTAAAATAACCTCTAGTTCTGTCAGCAGTTCAGGAGTTGCAATAGAAGGAATGGGCTTTGC
AATTCCCTCAAATGATGTTGTACAGATTATTAATCAATTAGAAACAAATGGTAAAGTTACTCGTCCAGCTCTTGGTGTAC
AAATGGTCAATCTAACAGACCTATCTACTAGTCAATTAGAAAAAGCAGGATTAGCAAATACAGACTTAACATCTGGAGTA
CTAATTGTATCTACTCAACCAGGTTTGCCAGCTGATGGAAAATTTGAACCATATGATGTCATTATTGAAATCGATGGTGA
AACCATTGAAAATAAGAGTGATTTACAAAGTGAACTTTACAAGCATCAAATTGGCGACACCATAACTGTTACCTATTATA
GAAATAATAAAAAAATGACTGTTGACATTAAGTTGACACATTCAACGGATGATTTGTCATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(289-385)

Trypsin-like peptidase domain (Trypsin_2)

(99-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

61.364

100

0.618
  htrA Streptococcus gordonii str. Challis substr. CH1

60.406

100

0.606
  htrA Streptococcus pneumoniae Rx1

57.398

99.746

0.573
  htrA Streptococcus pneumoniae TIGR4

57.398

99.746

0.573
  htrA Streptococcus pneumoniae D39

57.398

99.746

0.573
  htrA Streptococcus pneumoniae R6

57.398

99.746

0.573
  htrA Streptococcus mitis NCTC 12261

56.888

99.746

0.567