Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LLUC073_RS05355 Genome accession   NZ_CP068698
Coordinates   1031890..1032540 (-) Length   216 a.a.
NCBI ID   WP_282671486.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UC073     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1026890..1037540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC073_RS05325 (LLUC073_05175) - 1027081..1028613 (+) 1533 WP_015082368.1 Nramp family divalent metal transporter -
  LLUC073_RS05330 (LLUC073_05180) - 1028687..1029655 (+) 969 WP_021212212.1 PhoH family protein -
  LLUC073_RS05335 (LLUC073_05185) - 1029725..1030219 (+) 495 WP_011676092.1 NUDIX hydrolase -
  LLUC073_RS05340 (LLUC073_05190) ybeY 1030310..1030798 (+) 489 WP_011835335.1 rRNA maturation RNase YbeY -
  LLUC073_RS05345 (LLUC073_05195) - 1030782..1031237 (+) 456 WP_011676094.1 diacylglycerol kinase family protein -
  LLUC073_RS05350 (LLUC073_05200) - 1031254..1031832 (+) 579 WP_282671485.1 nucleotidyltransferase family protein -
  LLUC073_RS05355 (LLUC073_05205) comFC 1031890..1032540 (-) 651 WP_282671486.1 ComF family protein Machinery gene
  LLUC073_RS15130 - 1032540..1033834 (-) 1295 Protein_1031 helicase-related protein -
  LLUC073_RS05370 (LLUC073_05215) - 1033891..1034526 (+) 636 WP_011676097.1 YigZ family protein -
  LLUC073_RS05375 (LLUC073_05220) - 1034568..1035068 (+) 501 WP_282671487.1 VanZ family protein -
  LLUC073_RS05380 (LLUC073_05225) - 1035134..1036153 (+) 1020 WP_011676098.1 DUF475 domain-containing protein -
  LLUC073_RS05385 (LLUC073_05230) - 1036259..1037029 (+) 771 WP_282671488.1 5'-nucleotidase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25244.60 Da        Isoelectric Point: 10.0116

>NTDB_id=530463 LLUC073_RS05355 WP_282671486.1 1031890..1032540(-) (comFC) [Lactococcus cremoris strain UC073]
MQTCLLCSRIIKQTLTFSEFFLLKNKRNLICNKCQSLFKKIPNERCPRCSKSNSKGICADCLKWEEKGIIVNHQSIFIYN
QAMKDYFSLYKFMGDYRLHEVFDSYFKNLSKKIPLVPIPVSPKRLQERGFNQVTAFLKDRAYLDLLEKEDTVRQSSLNRE
GRLSTSNPFKLKEGEKIPKKIILIDDIYTTGTTFYHAIKTLKKANPIEITTFSLCR

Nucleotide


Download         Length: 651 bp        

>NTDB_id=530463 LLUC073_RS05355 WP_282671486.1 1031890..1032540(-) (comFC) [Lactococcus cremoris strain UC073]
ATGCAAACTTGTCTGCTTTGTTCCAGAATTATCAAACAAACACTCACTTTTAGTGAATTCTTTTTACTAAAGAATAAGAG
AAATTTAATATGCAATAAATGCCAATCACTGTTTAAAAAAATTCCTAACGAACGTTGTCCTCGTTGCTCTAAATCTAACT
CTAAAGGTATATGTGCTGACTGTCTCAAGTGGGAAGAAAAAGGAATCATTGTTAATCATCAGTCAATTTTTATTTATAAC
CAAGCAATGAAGGATTACTTTAGTCTTTACAAATTTATGGGAGATTATCGATTACACGAAGTCTTCGATTCCTATTTTAA
AAATTTGTCCAAAAAAATTCCTCTGGTTCCCATTCCGGTTTCTCCTAAAAGATTACAAGAAAGAGGTTTTAACCAAGTAA
CAGCTTTTCTAAAAGATAGAGCTTATCTTGATTTGCTTGAAAAAGAGGATACTGTCAGACAATCAAGTCTTAATCGCGAG
GGACGTCTATCAACTAGCAATCCTTTTAAGTTGAAAGAGGGTGAAAAAATACCCAAAAAAATCATTTTGATTGATGATAT
TTATACAACTGGAACTACTTTTTATCATGCAATAAAAACCTTAAAGAAAGCTAATCCGATTGAAATTACAACTTTCTCAC
TCTGCCGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

97.761

62.037

0.606
  comFC/cflB Streptococcus mitis NCTC 12261

50

100

0.505
  comFC/cflB Streptococcus pneumoniae Rx1

47.706

100

0.481
  comFC/cflB Streptococcus pneumoniae D39

47.706

100

0.481
  comFC/cflB Streptococcus pneumoniae R6

47.706

100

0.481
  comFC/cflB Streptococcus pneumoniae TIGR4

47.706

100

0.481
  comFC/cflB Streptococcus mitis SK321

47.706

100

0.481
  comFC Bacillus subtilis subsp. subtilis str. 168

34.802

100

0.366