Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   JL104_RS06960 Genome accession   NZ_CP068576
Coordinates   1412229..1412546 (+) Length   105 a.a.
NCBI ID   WP_056936206.1    Uniprot ID   -
Organism   Staphylococcus equorum strain KS1030     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1407229..1417546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL104_RS06930 - 1407367..1407567 (+) 201 WP_002512453.1 YqgQ family protein -
  JL104_RS06935 - 1408157..1409143 (+) 987 WP_002507500.1 glucokinase -
  JL104_RS06940 - 1409143..1409466 (+) 324 WP_202809363.1 MTH1187 family thiamine-binding protein -
  JL104_RS06945 - 1409468..1410091 (+) 624 WP_002507502.1 MBL fold metallo-hydrolase -
  JL104_RS06950 comGA 1410191..1411165 (+) 975 WP_002507503.1 competence type IV pilus ATPase ComGA Machinery gene
  JL104_RS06955 comGB 1411137..1412204 (+) 1068 WP_040762875.1 competence type IV pilus assembly protein ComGB -
  JL104_RS06960 comGC 1412229..1412546 (+) 318 WP_056936206.1 competence type IV pilus major pilin ComGC Machinery gene
  JL104_RS06965 - 1412569..1412970 (+) 402 WP_103170381.1 competence protein -
  JL104_RS06970 - 1412957..1413256 (+) 300 WP_002507507.1 hypothetical protein -
  JL104_RS06975 comGF 1413228..1413671 (+) 444 WP_202809364.1 competence type IV pilus minor pilin ComGF -
  JL104_RS06980 - 1413878..1414351 (+) 474 WP_230456625.1 shikimate kinase -
  JL104_RS06985 gcvT 1414530..1415621 (+) 1092 WP_202809365.1 glycine cleavage system aminomethyltransferase GcvT -
  JL104_RS06990 gcvPA 1415639..1416991 (+) 1353 WP_069818652.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11683.74 Da        Isoelectric Point: 8.4835

>NTDB_id=529642 JL104_RS06960 WP_056936206.1 1412229..1412546(+) (comGC) [Staphylococcus equorum strain KS1030]
MKNLKKLFNKEAFTLIEMLLVLLIISLLLILIIPNIAKQSSHIQTAGCEAQIKMIDSQIEAYSLKYNKKPTSIDELVSEG
YINESQKRCKTGSTISINNGEAVAN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=529642 JL104_RS06960 WP_056936206.1 1412229..1412546(+) (comGC) [Staphylococcus equorum strain KS1030]
TTGAAAAACTTAAAAAAACTATTTAATAAAGAAGCATTTACACTTATAGAAATGTTGCTTGTTTTATTAATCATAAGTTT
ATTGCTTATTTTAATCATACCTAACATTGCAAAACAATCATCACATATACAAACTGCTGGTTGTGAAGCTCAAATAAAAA
TGATAGACAGTCAAATTGAAGCTTATTCATTAAAATATAATAAAAAGCCAACATCAATCGATGAACTCGTCTCAGAAGGA
TATATTAACGAAAGTCAAAAGCGATGTAAAACTGGTTCAACAATTTCAATAAATAATGGTGAAGCGGTTGCTAACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

68.627

97.143

0.667
  comGC Staphylococcus aureus MW2

68.627

97.143

0.667
  comYC Streptococcus gordonii str. Challis substr. CH1

44.444

100

0.457
  comGC/cglC Streptococcus mitis NCTC 12261

41.053

90.476

0.371
  comGC Bacillus subtilis subsp. subtilis str. 168

41.489

89.524

0.371
  comYC Streptococcus mutans UA140

44.186

81.905

0.362
  comYC Streptococcus mutans UA159

44.186

81.905

0.362