Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JG554_RS11735 Genome accession   NZ_CP068241
Coordinates   2431681..2433051 (-) Length   456 a.a.
NCBI ID   WP_107360032.1    Uniprot ID   -
Organism   Staphylococcus sp. 11-B-312     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2426681..2438051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JG554_RS11720 (JG554_11720) cysE 2427690..2428331 (-) 642 WP_046207703.1 serine O-acetyltransferase -
  JG554_RS11725 (JG554_11725) gltX 2428655..2430109 (-) 1455 WP_107360031.1 glutamate--tRNA ligase -
  JG554_RS11730 (JG554_11730) - 2430548..2431606 (-) 1059 WP_070039491.1 PIN/TRAM domain-containing protein -
  JG554_RS11735 (JG554_11735) radA 2431681..2433051 (-) 1371 WP_107360032.1 DNA repair protein RadA Machinery gene
  JG554_RS11740 (JG554_11740) - 2433402..2435864 (-) 2463 WP_046207694.1 ATP-dependent Clp protease ATP-binding subunit -
  JG554_RS11745 (JG554_11745) - 2435876..2436886 (-) 1011 WP_182478087.1 protein arginine kinase -
  JG554_RS11750 (JG554_11750) - 2436879..2437430 (-) 552 WP_046207696.1 UvrB/UvrC motif-containing protein -
  JG554_RS11755 (JG554_11755) - 2437455..2437916 (-) 462 WP_019468588.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50430.92 Da        Isoelectric Point: 7.2806

>NTDB_id=528502 JG554_RS11735 WP_107360032.1 2431681..2433051(-) (radA) [Staphylococcus sp. 11-B-312]
MAKKKVIFECMACGYQSPKWMGKCPNCGGWNQMEEIIEQKSTSPKHGVRSRENTSKVQKLNDIKHETTPRVKTNSAEFNR
VLGGGIVNGSLVLIGGDPGIGKSTLLLQICAALSQEKNVLYITGEESLNQTKLRADRLDEESSHLNVFAETDLEVIHETV
KQLKPDLLVVDSIQTIFHPEISSAPGSVSQVRESTQSLMNIAKQLNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVKNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLGIIIATASSFKDLTVDGLDCFIGEVGLTGEV
RRVSRIEQRVQEAEKLGFKRIIIPESNIGGWEFPSNIKVIGVTNVHEALKYALSKH

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=528502 JG554_RS11735 WP_107360032.1 2431681..2433051(-) (radA) [Staphylococcus sp. 11-B-312]
TTGGCCAAAAAGAAAGTGATTTTTGAATGCATGGCATGTGGTTATCAGTCACCTAAATGGATGGGGAAATGTCCTAACTG
TGGTGGATGGAATCAAATGGAAGAAATCATAGAACAGAAATCGACAAGTCCGAAACATGGTGTGCGCAGTCGTGAAAATA
CATCCAAAGTACAGAAGTTAAATGATATAAAGCATGAGACAACACCACGTGTTAAAACGAATTCAGCAGAGTTTAATCGA
GTGCTTGGTGGCGGAATCGTTAATGGTTCACTTGTGTTGATTGGTGGCGATCCAGGTATCGGTAAATCAACACTATTGCT
TCAAATATGTGCAGCGTTATCACAAGAGAAAAACGTTTTATATATAACTGGTGAAGAATCATTAAATCAAACAAAATTAA
GAGCAGATCGATTAGATGAAGAGTCAAGTCATTTAAATGTATTTGCAGAAACAGATTTAGAAGTGATACATGAAACAGTT
AAACAATTGAAGCCTGATTTGCTTGTTGTAGATTCTATTCAGACTATTTTTCACCCTGAAATCAGTTCTGCACCCGGTTC
GGTATCTCAGGTGAGAGAGAGTACACAGAGCTTGATGAATATAGCTAAACAACTAAATATCGCGACGTTTATTGTTGGTC
ACGTTACGAAAGAAGGTCAGATTGCGGGACCTCGTTTGCTAGAACATATGGTAGATACGGTGCTTTATTTTGAAGGTGAT
GAGCATCATGCTTATCGGATTTTAAGAGCGGTAAAAAATCGCTTTGGCTCTACAAATGAAATGGGTATTTTTGAAATGAA
ACAGAGTGGATTGAAAGGTGTTAAAAATCCTTCAGAAATGTTTTTAGAAGAACGGTCTACAAATGTTCCAGGTTCGACAA
TCGTGTCTACTATGGAAGGTACGCGACCATTATTAATTGAGGTTCAAGCGTTAGTGACACCCACAACATTTAATAATCCT
AGACGTATGGCGACAGGAATAGATCACAATCGTTTAAGTTTGTTAATGGCTGTATTAGAGAAAAAAGAAAATTATTTACT
GCAACAACAAGATGCCTATATTAAAGTAGCTGGTGGCGTAAGATTAACAGAACCTGCTGTTGATTTAGGAATCATTATTG
CTACTGCCTCAAGCTTTAAAGATTTAACTGTAGATGGCTTAGACTGTTTTATCGGCGAAGTTGGTTTAACAGGGGAAGTG
AGACGTGTTTCTCGCATTGAACAACGTGTACAAGAAGCGGAAAAATTAGGTTTTAAACGCATTATTATTCCTGAATCTAA
TATTGGGGGTTGGGAATTCCCGAGCAACATTAAAGTCATTGGTGTGACAAATGTCCATGAGGCATTAAAATATGCCTTAT
CAAAACATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.132

100

0.651
  radA Streptococcus pneumoniae Rx1

59.031

99.561

0.588
  radA Streptococcus pneumoniae D39

59.031

99.561

0.588
  radA Streptococcus pneumoniae R6

59.031

99.561

0.588
  radA Streptococcus pneumoniae TIGR4

59.031

99.561

0.588
  radA Streptococcus mitis SK321

59.031

99.561

0.588
  radA Streptococcus mitis NCTC 12261

59.031

99.561

0.588