Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   K6969_RS06320 Genome accession   NZ_CP082205
Coordinates   1300902..1301744 (-) Length   280 a.a.
NCBI ID   WP_171942927.1    Uniprot ID   -
Organism   Streptococcus suis strain AKJ18     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1295902..1306744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6969_RS06300 (K6969_06210) rplL 1296107..1296472 (-) 366 WP_002936483.1 50S ribosomal protein L7/L12 -
  K6969_RS06305 (K6969_06215) rplJ 1296538..1297032 (-) 495 WP_002936486.1 50S ribosomal protein L10 -
  K6969_RS06310 (K6969_06220) - 1297512..1298370 (+) 859 Protein_1224 IS630 family transposase -
  K6969_RS06315 (K6969_06225) topA 1298716..1300809 (-) 2094 WP_171942928.1 type I DNA topoisomerase -
  K6969_RS06320 (K6969_06230) dprA 1300902..1301744 (-) 843 WP_171942927.1 DNA-processing protein DprA Machinery gene
  K6969_RS06325 (K6969_06235) - 1301803..1302360 (-) 558 WP_029173297.1 sugar O-acetyltransferase -
  K6969_RS06330 (K6969_06240) - 1302490..1302801 (+) 312 WP_004195690.1 rhodanese-like domain-containing protein -
  K6969_RS06335 (K6969_06245) - 1302898..1303449 (+) 552 WP_004195688.1 DUF1836 domain-containing protein -
  K6969_RS06340 (K6969_06250) trhA 1303439..1304089 (+) 651 WP_004195686.1 PAQR family membrane homeostasis protein TrhA -
  K6969_RS06345 (K6969_06255) - 1304122..1305132 (-) 1011 WP_014638941.1 YdcF family protein -
  K6969_RS06350 (K6969_06260) - 1305129..1305908 (-) 780 WP_014638942.1 ribonuclease HII -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31271.15 Da        Isoelectric Point: 8.4451

>NTDB_id=527355 K6969_RS06320 WP_171942927.1 1300902..1301744(-) (dprA) [Streptococcus suis strain AKJ18]
MNNFELFKWKKAGLTNLNVNKVLAYQEKHGKKLTLRNVAVVSECKNPVLFMENYKNLDIKACREEFNKYPSFSILDDIYP
LALKQIYNPPVLLFYQGDLELLEKSKLAVVGTRNASKNGVQSVQKIIKELNNRFVIVSGLARGIDTAAHIASLKNGGQTI
AVIGTGLDNIYPKENKDLQTYIGKHHLVLTEYEPGAQPLKYHFPERNRIIAGLVEGLVVCEAKMRSGSLITCERALEEGR
EVYAIPGSIMDGKSDGCHHLIQEGAKCITSGLDILSDYQF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=527355 K6969_RS06320 WP_171942927.1 1300902..1301744(-) (dprA) [Streptococcus suis strain AKJ18]
ATGAATAATTTTGAATTGTTTAAATGGAAAAAAGCAGGTTTGACCAATCTTAATGTGAATAAAGTTTTGGCCTATCAAGA
AAAACACGGTAAAAAATTGACCTTGCGAAATGTCGCTGTTGTTTCTGAATGTAAAAATCCAGTGCTATTTATGGAAAATT
ATAAGAATCTAGATATAAAAGCCTGTCGCGAGGAATTTAATAAGTATCCATCATTTTCAATTTTAGATGACATCTATCCT
TTGGCGCTCAAACAGATTTACAATCCACCTGTACTTTTGTTTTATCAAGGGGATTTAGAATTGCTGGAAAAATCAAAGCT
GGCAGTCGTTGGTACACGAAATGCCAGTAAAAATGGCGTTCAGTCTGTTCAGAAGATTATCAAAGAACTCAACAATCGCT
TTGTCATTGTCAGTGGTTTGGCAAGAGGAATTGATACAGCAGCCCACATCGCCAGTTTGAAAAATGGAGGCCAAACCATT
GCTGTAATTGGAACAGGTTTAGATAATATTTATCCAAAAGAAAATAAGGATTTGCAGACCTATATTGGAAAACACCATTT
GGTGCTGACTGAGTATGAACCGGGTGCCCAGCCCCTCAAATACCATTTCCCAGAACGCAATCGCATTATAGCTGGTTTGG
TGGAAGGATTGGTAGTCTGCGAGGCAAAAATGCGGTCTGGCAGCTTGATTACTTGTGAACGTGCCTTGGAAGAAGGCAGA
GAAGTCTATGCTATTCCAGGTTCCATTATGGACGGAAAATCAGATGGTTGTCATCATTTGATTCAAGAGGGGGCAAAGTG
CATTACATCAGGCTTGGACATCCTTTCAGACTATCAATTTTAA

Domains

Predicted by InterProScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-60)

DNA recombination-mediator protein A (DNA_processg_A)

(73-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

70

100

0.7
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

63.571

100

0.636
  dprA/cilB/dalA Streptococcus pneumoniae D39

63.571

100

0.636
  dprA/cilB/dalA Streptococcus pneumoniae R6

63.571

100

0.636
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

63.571

100

0.636
  dprA/cilB/dalA Streptococcus mitis SK321

63.571

100

0.636
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

63.571

100

0.636
  dprA Lactococcus lactis subsp. cremoris KW2

59.643

100

0.596
  dprA Bacillus subtilis subsp. subtilis str. 168

49.099

79.286

0.389
  dprA Vibrio campbellii strain DS40M4

35.836

100

0.375
  dprA Legionella pneumophila strain ERS1305867

41.296

88.214

0.364