Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   K6972_RS01010 Genome accession   NZ_CP082203
Coordinates   159461..159646 (+) Length   61 a.a.
NCBI ID   WP_016056161.1    Uniprot ID   -
Organism   Streptococcus suis strain NJ3     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 154461..164646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS00985 (K6972_00985) - 155439..157502 (+) 2064 WP_016056166.1 DUF859 family phage minor structural protein -
  K6972_RS00990 (K6972_00990) - 157564..157827 (+) 264 WP_024410576.1 hypothetical protein -
  K6972_RS00995 (K6972_00995) - 157840..158295 (+) 456 WP_016056164.1 hypothetical protein -
  K6972_RS01000 (K6972_01000) - 158270..158473 (+) 204 WP_016056163.1 putative holin protein -
  K6972_RS01005 (K6972_01005) - 158603..159313 (+) 711 WP_016056162.1 CHAP domain-containing protein -
  K6972_RS01010 (K6972_01010) prx 159461..159646 (+) 186 WP_016056161.1 hypothetical protein Regulator
  K6972_RS01015 (K6972_01015) - 159671..159973 (+) 303 Protein_168 ATPase, T2SS/T4P/T4SS family -
  K6972_RS01020 (K6972_01020) comGB 159885..160922 (+) 1038 WP_261984178.1 competence type IV pilus assembly protein ComGB Machinery gene
  K6972_RS01025 (K6972_01025) comGC 160924..161205 (+) 282 WP_114866111.1 competence type IV pilus major pilin ComGC Machinery gene
  K6972_RS01030 (K6972_01030) comGD 161186..161593 (+) 408 WP_114866112.1 competence type IV pilus minor pilin ComGD Machinery gene
  K6972_RS01035 (K6972_01035) comGE 161565..161858 (+) 294 WP_205026479.1 competence type IV pilus minor pilin ComGE Machinery gene
  K6972_RS01040 (K6972_01040) comGF/cglF 161845..162279 (+) 435 WP_024407345.1 competence type IV pilus minor pilin ComGF Machinery gene
  K6972_RS01045 (K6972_01045) comGG 162257..162667 (+) 411 WP_114866114.1 competence type IV pilus minor pilin ComGG -
  K6972_RS01050 (K6972_01050) comGH 162724..163677 (+) 954 WP_024414316.1 class I SAM-dependent methyltransferase Machinery gene

Sequence

Protein


Download         Length: 61 a.a.        Molecular weight: 7128.08 Da        Isoelectric Point: 4.1947

>NTDB_id=527110 K6972_RS01010 WP_016056161.1 159461..159646(+) (prx) [Streptococcus suis strain NJ3]
MSETYYIFVEGIENGWFSDFVQVVRKDGKIFDFVLPGEKVQPHEVVSIEKLDDVIKEISNY

Nucleotide


Download         Length: 186 bp        

>NTDB_id=527110 K6972_RS01010 WP_016056161.1 159461..159646(+) (prx) [Streptococcus suis strain NJ3]
GTGAGTGAAACGTATTATATTTTTGTAGAGGGCATTGAAAATGGTTGGTTTAGTGATTTTGTACAGGTTGTGAGAAAAGA
CGGTAAAATATTTGATTTTGTATTGCCTGGCGAAAAAGTACAGCCACATGAGGTTGTGAGCATCGAGAAATTGGATGATG
TTATTAAAGAGATTTCCAACTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS8232

51.724

95.082

0.492
  prx Streptococcus pyogenes MGAS315

45.614

93.443

0.426
  prx Streptococcus pyogenes MGAS315

44.643

91.803

0.41
  prx Streptococcus pyogenes MGAS315

42.857

91.803

0.393
  prx Streptococcus pyogenes MGAS315

57.5

65.574

0.377