Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | I6I90_RS00910 | Genome accession | NZ_CP068106 |
| Coordinates | 171877..172302 (+) | Length | 141 a.a. |
| NCBI ID | WP_004165764.1 | Uniprot ID | E0NDA2 |
| Organism | Pediococcus acidilactici strain FDAARGOS_1133 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 161013..202848 | 171877..172302 | within | 0 |
Gene organization within MGE regions
Location: 161013..202848
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6I90_RS00815 (I6I90_00815) | - | 161013..162188 (-) | 1176 | WP_004165738.1 | tyrosine-type recombinase/integrase | - |
| I6I90_RS00820 (I6I90_00820) | - | 162302..162490 (-) | 189 | WP_004165739.1 | hypothetical protein | - |
| I6I90_RS00825 (I6I90_00825) | - | 162578..163375 (-) | 798 | WP_036671193.1 | DUF1828 domain-containing protein | - |
| I6I90_RS00830 (I6I90_00830) | - | 163392..163829 (-) | 438 | WP_004165741.1 | DUF6978 family protein | - |
| I6I90_RS00835 (I6I90_00835) | - | 163915..164898 (-) | 984 | WP_036671196.1 | hypothetical protein | - |
| I6I90_RS00840 (I6I90_00840) | - | 164967..165374 (-) | 408 | WP_004165745.1 | ImmA/IrrE family metallo-endopeptidase | - |
| I6I90_RS00845 (I6I90_00845) | - | 165386..165757 (-) | 372 | WP_004165746.1 | helix-turn-helix domain-containing protein | - |
| I6I90_RS00850 (I6I90_00850) | - | 165918..166160 (+) | 243 | WP_004165747.1 | helix-turn-helix transcriptional regulator | - |
| I6I90_RS00855 (I6I90_00855) | - | 166157..166486 (+) | 330 | WP_004165748.1 | hypothetical protein | - |
| I6I90_RS00860 (I6I90_00860) | - | 166703..166918 (+) | 216 | WP_004165750.1 | hypothetical protein | - |
| I6I90_RS00865 (I6I90_00865) | - | 167004..167468 (+) | 465 | WP_126130475.1 | helix-turn-helix domain-containing protein | - |
| I6I90_RS00870 (I6I90_00870) | - | 167469..167750 (+) | 282 | WP_004165753.1 | hypothetical protein | - |
| I6I90_RS00875 (I6I90_00875) | - | 167988..168233 (+) | 246 | WP_004165755.1 | hypothetical protein | - |
| I6I90_RS00880 (I6I90_00880) | bet | 168226..169017 (+) | 792 | WP_004165756.1 | phage recombination protein Bet | - |
| I6I90_RS00885 (I6I90_00885) | - | 168926..169807 (+) | 882 | WP_004165757.1 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| I6I90_RS00890 (I6I90_00890) | - | 169817..170698 (+) | 882 | WP_004165758.1 | helix-turn-helix domain-containing protein | - |
| I6I90_RS00895 (I6I90_00895) | - | 170703..171392 (+) | 690 | WP_004165760.1 | putative HNHc nuclease | - |
| I6I90_RS00900 (I6I90_00900) | - | 171436..171663 (+) | 228 | WP_004165761.1 | helix-turn-helix domain-containing protein | - |
| I6I90_RS00905 (I6I90_00905) | - | 171678..171884 (+) | 207 | WP_004165763.1 | hypothetical protein | - |
| I6I90_RS00910 (I6I90_00910) | ssb | 171877..172302 (+) | 426 | WP_004165764.1 | single-stranded DNA-binding protein | Machinery gene |
| I6I90_RS00915 (I6I90_00915) | - | 172314..172619 (+) | 306 | WP_004165765.1 | HTH domain-containing protein | - |
| I6I90_RS00920 (I6I90_00920) | - | 172963..173373 (+) | 411 | WP_004165767.1 | hypothetical protein | - |
| I6I90_RS00925 (I6I90_00925) | - | 173587..173865 (+) | 279 | WP_143121384.1 | hypothetical protein | - |
| I6I90_RS00935 (I6I90_00935) | - | 174520..175377 (+) | 858 | WP_126130477.1 | macro domain-containing protein | - |
| I6I90_RS00940 (I6I90_00940) | - | 175361..175837 (+) | 477 | WP_004165770.1 | TIR domain-containing protein | - |
| I6I90_RS00945 (I6I90_00945) | - | 175911..176105 (+) | 195 | WP_004165771.1 | hypothetical protein | - |
| I6I90_RS00950 (I6I90_00950) | - | 176337..177044 (+) | 708 | WP_004165772.1 | terminase gpP N-terminus-related DNA-binding protein | - |
| I6I90_RS00955 (I6I90_00955) | - | 177041..178339 (+) | 1299 | WP_004165774.1 | PBSX family phage terminase large subunit | - |
| I6I90_RS00960 (I6I90_00960) | - | 178351..179880 (+) | 1530 | WP_004165775.1 | phage portal protein | - |
| I6I90_RS00965 (I6I90_00965) | - | 179877..180926 (+) | 1050 | WP_004165776.1 | gp4 family protein | - |
| I6I90_RS00970 (I6I90_00970) | - | 181050..181628 (+) | 579 | WP_004165777.1 | phage scaffolding protein | - |
| I6I90_RS00975 (I6I90_00975) | - | 181642..182595 (+) | 954 | WP_004165778.1 | phage major capsid protein | - |
| I6I90_RS00980 (I6I90_00980) | - | 182657..183058 (+) | 402 | WP_036671210.1 | hypothetical protein | - |
| I6I90_RS00985 (I6I90_00985) | - | 183051..183428 (+) | 378 | WP_004165780.1 | putative minor capsid protein | - |
| I6I90_RS00990 (I6I90_00990) | - | 183425..183805 (+) | 381 | WP_004165781.1 | minor capsid protein | - |
| I6I90_RS00995 (I6I90_00995) | - | 183798..184214 (+) | 417 | WP_004165782.1 | hypothetical protein | - |
| I6I90_RS01000 (I6I90_01000) | - | 184230..184817 (+) | 588 | WP_004165783.1 | phage tail tube protein | - |
| I6I90_RS01005 (I6I90_01005) | - | 184891..185148 (+) | 258 | WP_126130478.1 | phosphoenolpyruvate synthase | - |
| I6I90_RS01010 (I6I90_01010) | - | 185218..185772 (+) | 555 | WP_004165786.1 | hypothetical protein | - |
| I6I90_RS01015 (I6I90_01015) | - | 185775..186395 (+) | 621 | WP_004165787.1 | Gp15 family bacteriophage protein | - |
| I6I90_RS01020 (I6I90_01020) | - | 186399..192056 (+) | 5658 | WP_004165788.1 | phage tail tape measure protein | - |
| I6I90_RS01025 (I6I90_01025) | - | 192053..192877 (+) | 825 | WP_004165789.1 | phage tail family protein | - |
| I6I90_RS01030 (I6I90_01030) | - | 192890..193993 (+) | 1104 | WP_004165790.1 | phage tail protein | - |
| I6I90_RS01035 (I6I90_01035) | - | 194004..194495 (+) | 492 | WP_036671212.1 | phage tail protein | - |
| I6I90_RS01040 (I6I90_01040) | - | 194488..194799 (+) | 312 | WP_036671214.1 | hypothetical protein | - |
| I6I90_RS01045 (I6I90_01045) | - | 194792..195061 (+) | 270 | WP_004165794.1 | hypothetical protein | - |
| I6I90_RS01050 (I6I90_01050) | - | 195065..196897 (+) | 1833 | WP_004165795.1 | metallophosphoesterase | - |
| I6I90_RS01055 (I6I90_01055) | - | 196923..197672 (+) | 750 | WP_143121385.1 | hypothetical protein | - |
| I6I90_RS01060 (I6I90_01060) | - | 197683..198006 (+) | 324 | WP_036671216.1 | hypothetical protein | - |
| I6I90_RS01065 (I6I90_01065) | - | 197999..198124 (+) | 126 | WP_004165798.1 | XkdX family protein | - |
| I6I90_RS01070 (I6I90_01070) | - | 198205..198852 (+) | 648 | WP_004165799.1 | hypothetical protein | - |
| I6I90_RS01075 (I6I90_01075) | - | 198921..199166 (+) | 246 | WP_126130481.1 | hypothetical protein | - |
| I6I90_RS01080 (I6I90_01080) | - | 199166..199417 (+) | 252 | WP_004165801.1 | phage holin | - |
| I6I90_RS01085 (I6I90_01085) | - | 199371..200765 (+) | 1395 | WP_231698964.1 | GH25 family lysozyme | - |
| I6I90_RS01090 (I6I90_01090) | - | 200890..201735 (+) | 846 | WP_004165803.1 | hypothetical protein | - |
| I6I90_RS01095 (I6I90_01095) | - | 202159..202848 (-) | 690 | WP_004165804.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15729.44 Da Isoelectric Point: 5.1871
>NTDB_id=527115 I6I90_RS00910 WP_004165764.1 171877..172302(+) (ssb) [Pediococcus acidilactici strain FDAARGOS_1133]
MINRAVLVGRLTRDPELKYTTNGAAVASFNLAVNRQFTNSQGEREADFINCVMWRKAAEIFCNYTHKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVTENFSLLDSKPKEHQQNNAGQVSTPGDPFANGGQSIDITDEDLPF
MINRAVLVGRLTRDPELKYTTNGAAVASFNLAVNRQFTNSQGEREADFINCVMWRKAAEIFCNYTHKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVTENFSLLDSKPKEHQQNNAGQVSTPGDPFANGGQSIDITDEDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=527115 I6I90_RS00910 WP_004165764.1 171877..172302(+) (ssb) [Pediococcus acidilactici strain FDAARGOS_1133]
GTGATTAATCGAGCAGTACTAGTCGGGCGATTAACGAGAGACCCCGAACTAAAGTACACAACCAATGGCGCAGCGGTCGC
TAGCTTTAACCTAGCAGTCAATCGCCAGTTTACTAACTCACAGGGTGAACGCGAAGCGGATTTCATCAACTGCGTAATGT
GGCGAAAGGCGGCAGAAATTTTCTGCAACTATACTCACAAAGGTTCGTTGGTTGGCATTGATGGCCGGATTCAAACCCGT
TCATACGAAAACCAACAAGGACAACGAGTGTATGTTACCGAAGTTGTTACAGAAAACTTCTCGTTGCTGGATTCAAAGCC
GAAAGAACATCAGCAAAATAACGCAGGGCAAGTATCAACGCCAGGAGATCCGTTCGCTAATGGCGGACAGTCAATTGATA
TCACCGATGAAGATTTACCGTTCTAG
GTGATTAATCGAGCAGTACTAGTCGGGCGATTAACGAGAGACCCCGAACTAAAGTACACAACCAATGGCGCAGCGGTCGC
TAGCTTTAACCTAGCAGTCAATCGCCAGTTTACTAACTCACAGGGTGAACGCGAAGCGGATTTCATCAACTGCGTAATGT
GGCGAAAGGCGGCAGAAATTTTCTGCAACTATACTCACAAAGGTTCGTTGGTTGGCATTGATGGCCGGATTCAAACCCGT
TCATACGAAAACCAACAAGGACAACGAGTGTATGTTACCGAAGTTGTTACAGAAAACTTCTCGTTGCTGGATTCAAAGCC
GAAAGAACATCAGCAAAATAACGCAGGGCAAGTATCAACGCCAGGAGATCCGTTCGCTAATGGCGGACAGTCAATTGATA
TCACCGATGAAGATTTACCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.412 |
100 |
0.716 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.179 |
100 |
0.652 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.633 |
77.305 |
0.461 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
42.958 |
100 |
0.433 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
42.958 |
100 |
0.433 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
42.254 |
100 |
0.426 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
42.254 |
100 |
0.426 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
42.254 |
100 |
0.426 |
| ssbB/cilA | Streptococcus mitis SK321 |
42.254 |
100 |
0.426 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
41.844 |
100 |
0.418 |
| ssbA | Streptococcus mutans UA159 |
36.879 |
100 |
0.369 |