Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   JJN14_RS09830 Genome accession   NZ_CP067992
Coordinates   1998721..1999383 (-) Length   220 a.a.
NCBI ID   WP_201058557.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V7-A3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1993721..2004383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN14_RS09805 (JJN14_09805) - 1993871..1994137 (-) 267 WP_001278169.1 Veg family protein -
  JJN14_RS09810 (JJN14_09810) dnaB 1994139..1995491 (-) 1353 WP_004263550.1 replicative DNA helicase -
  JJN14_RS09815 (JJN14_09815) rplI 1995535..1995987 (-) 453 WP_060627336.1 50S ribosomal protein L9 -
  JJN14_RS09820 (JJN14_09820) - 1995984..1997957 (-) 1974 WP_201058556.1 DHH family phosphoesterase -
  JJN14_RS09825 (JJN14_09825) hpf 1998093..1998641 (-) 549 WP_004255322.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  JJN14_RS09830 (JJN14_09830) comFC/cflB 1998721..1999383 (-) 663 WP_201058557.1 ComF family protein Machinery gene
  JJN14_RS09835 (JJN14_09835) comFA/cflA 1999380..2000678 (-) 1299 WP_201058558.1 DEAD/DEAH box helicase Machinery gene
  JJN14_RS09840 (JJN14_09840) - 2000735..2001370 (+) 636 WP_033682509.1 YigZ family protein -
  JJN14_RS09845 (JJN14_09845) - 2001386..2001829 (+) 444 WP_061088574.1 PH domain-containing protein -
  JJN14_RS09850 (JJN14_09850) cysK 2001926..2002852 (+) 927 WP_201058559.1 cysteine synthase A -
  JJN14_RS09855 (JJN14_09855) tsf 2002978..2004018 (-) 1041 WP_033682512.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25090.12 Da        Isoelectric Point: 7.3701

>NTDB_id=526186 JJN14_RS09830 WP_201058557.1 1998721..1999383(-) (comFC/cflB) [Streptococcus mitis strain S022-V7-A3]
MKCLLCGQTMKAVLTFSSLLLLKNDASCLCLDCDSTFDKIGEENCPNCMKTGLSTKCQDCQFWCKEGVEVSHRAIFIYNQ
AMKDFFSRYKFDGDFLLRKVFASVLSEELKKYKEYQFVVIPLSPERLLERGFNQVEGLVEAAGFSFQDLLEKREERASSS
KNRSERLATELPFFVKSGVTIPKKILLIDDIYTTGTTINRMKKLLEEAGAEDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=526186 JJN14_RS09830 WP_201058557.1 1998721..1999383(-) (comFC/cflB) [Streptococcus mitis strain S022-V7-A3]
ATGAAGTGTTTATTATGTGGGCAGACTATGAAGGCTGTTTTAACTTTCAGTAGTCTTTTACTTCTGAAGAATGATGCATC
CTGTCTTTGTTTAGATTGTGATTCTACTTTTGATAAGATTGGAGAAGAGAACTGTCCAAACTGTATGAAAACAGGATTGT
CAACAAAGTGTCAAGATTGTCAATTTTGGTGTAAAGAAGGAGTTGAAGTCAGTCATAGAGCGATTTTTATTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTTTTAAGAAAAGTCTTTGCTTCAGTTTTAAGTGA
GGAGTTAAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGAAAGATTGCTCGAGAGGGGATTTAACC
AGGTTGAAGGTTTAGTTGAAGCAGCAGGGTTCTCTTTTCAAGACTTACTAGAGAAGAGAGAAGAGCGAGCTAGTTCTTCC
AAAAATCGTTCAGAACGCTTGGCAACAGAACTTCCCTTCTTTGTCAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACCGGAACAACTATAAATCGTATGAAGAAACTGTTGGAAGAAGCTGGTGCTGAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(171-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

94.545

100

0.945
  comFC/cflB Streptococcus mitis NCTC 12261

94.091

100

0.941
  comFC/cflB Streptococcus pneumoniae TIGR4

90

100

0.9
  comFC/cflB Streptococcus pneumoniae Rx1

89.545

100

0.895
  comFC/cflB Streptococcus pneumoniae D39

89.545

100

0.895
  comFC/cflB Streptococcus pneumoniae R6

89.545

100

0.895
  comFC Bacillus subtilis subsp. subtilis str. 168

35.965

100

0.373