Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JI721_RS06165 Genome accession   NZ_CP067097
Coordinates   1346158..1346640 (-) Length   160 a.a.
NCBI ID   WP_274457181.1    Uniprot ID   -
Organism   Alicyclobacillus cycloheptanicus strain SCH     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1341158..1351640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JI721_RS06130 (JI721_06140) - 1341598..1341966 (+) 369 WP_274457174.1 hypothetical protein -
  JI721_RS06135 (JI721_06145) - 1342066..1342353 (-) 288 WP_274457175.1 hypothetical protein -
  JI721_RS06140 (JI721_06150) dnaB 1342507..1343892 (-) 1386 WP_274457176.1 replicative DNA helicase -
  JI721_RS06145 (JI721_06155) rplI 1343995..1344450 (-) 456 WP_274457177.1 50S ribosomal protein L9 -
  JI721_RS06150 (JI721_06160) - 1344505..1345401 (-) 897 WP_274457178.1 DUF2232 domain-containing protein -
  JI721_RS06155 (JI721_06165) - 1345407..1345712 (-) 306 WP_274457179.1 MazG-like family protein -
  JI721_RS06160 (JI721_06170) rpsR 1345877..1346107 (-) 231 WP_274457180.1 30S ribosomal protein S18 -
  JI721_RS06165 (JI721_06175) ssbA 1346158..1346640 (-) 483 WP_274457181.1 single-stranded DNA-binding protein Machinery gene
  JI721_RS06170 (JI721_06180) rpsF 1346663..1346950 (-) 288 WP_274457182.1 30S ribosomal protein S6 -
  JI721_RS06175 (JI721_06185) ychF 1347098..1348201 (-) 1104 WP_274457183.1 redox-regulated ATPase YchF -
  JI721_RS06180 - 1348423..1348545 (+) 123 WP_274457184.1 hypothetical protein -
  JI721_RS06185 (JI721_06190) - 1348605..1350608 (-) 2004 WP_274457185.1 molybdopterin-dependent oxidoreductase -
  JI721_RS06190 (JI721_06195) - 1350623..1350850 (-) 228 WP_274457186.1 DUF951 domain-containing protein -
  JI721_RS06195 (JI721_06200) - 1350924..1351514 (-) 591 WP_274457187.1 hypothetical protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17909.01 Da        Isoelectric Point: 4.7066

>NTDB_id=525000 JI721_RS06165 WP_274457181.1 1346158..1346640(-) (ssbA) [Alicyclobacillus cycloheptanicus strain SCH]
MLNRVILIGRLTQDPELRYTNSGTAVASFSLAVDRARPNQAGERETDFINIVVWQKQAELCAQYLHKGRLAAVDGRLQIR
SYENREGQKVRVAEVVAETVRFLDRGDRTDNAFAQSAPASMPAGAPMSRPRPEPKTPQYDDDPFADDSQMIDISDDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=525000 JI721_RS06165 WP_274457181.1 1346158..1346640(-) (ssbA) [Alicyclobacillus cycloheptanicus strain SCH]
ATGTTAAACCGGGTGATTCTCATTGGCAGACTGACGCAAGACCCAGAACTGCGGTACACGAACTCCGGAACGGCGGTTGC
CTCGTTCTCGCTGGCAGTCGACCGTGCGCGTCCGAACCAGGCTGGTGAACGCGAAACGGACTTCATCAATATCGTAGTCT
GGCAAAAGCAGGCGGAGCTTTGCGCACAGTACTTGCACAAAGGACGTTTGGCAGCTGTGGACGGCCGCCTGCAGATTCGA
AGCTATGAGAATCGCGAAGGGCAAAAGGTTCGTGTGGCAGAAGTCGTCGCCGAAACGGTGCGTTTTCTCGATCGCGGCGA
TCGCACTGACAATGCGTTCGCGCAAAGTGCACCGGCGAGCATGCCTGCCGGCGCGCCCATGTCCCGACCCAGACCGGAAC
CGAAAACCCCTCAGTACGACGATGATCCATTTGCTGACGACAGCCAAATGATCGACATATCGGATGACGACTTGCCATTC
TGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.867

100

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

46.512

100

0.5
  ssb Neisseria meningitidis MC58

35.593

100

0.394
  ssb Neisseria gonorrhoeae MS11

35.593

100

0.394
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.769

65

0.362
  ssb Vibrio cholerae strain A1552

32.222

100

0.362