Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   JFY49_RS14430 Genome accession   NZ_CP067019
Coordinates   2930845..2931579 (-) Length   244 a.a.
NCBI ID   WP_200223285.1    Uniprot ID   A0A7T7U114
Organism   Acinetobacter sp. CS-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2925845..2936579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFY49_RS14410 (JFY49_14410) aroB 2926453..2927538 (-) 1086 WP_200223283.1 3-dehydroquinate synthase -
  JFY49_RS14415 (JFY49_14415) aroK 2927556..2928104 (-) 549 WP_166168596.1 shikimate kinase AroK -
  JFY49_RS14420 (JFY49_14420) pilQ 2928141..2930252 (-) 2112 WP_200223284.1 type IV pilus secretin PilQ family protein Machinery gene
  JFY49_RS14425 (JFY49_14425) pilP 2930315..2930842 (-) 528 WP_086197205.1 pilus assembly protein PilP Machinery gene
  JFY49_RS14430 (JFY49_14430) pilO 2930845..2931579 (-) 735 WP_200223285.1 type 4a pilus biogenesis protein PilO Machinery gene
  JFY49_RS14435 (JFY49_14435) pilN 2931576..2932229 (-) 654 WP_166168585.1 PilN domain-containing protein Machinery gene
  JFY49_RS14440 (JFY49_14440) pilM 2932229..2933257 (-) 1029 WP_227609478.1 pilus assembly protein PilM Machinery gene
  JFY49_RS14445 (JFY49_14445) - 2933260..2934288 (-) 1029 WP_200223286.1 transposase -
  JFY49_RS14450 (JFY49_14450) - 2934316..2935344 (-) 1029 WP_200223267.1 transposase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27271.88 Da        Isoelectric Point: 4.6966

>NTDB_id=524486 JFY49_RS14430 WP_200223285.1 2930845..2931579(-) (pilO) [Acinetobacter sp. CS-2]
MSLDEFDELNPNEAVVRKKKMTLDKFLQQFNTLDPNNYGSWPLSVKITCWIAIVLAIGILGYFLTIKGKLEDISNAAAQE
QNLLNEFREKDSKLRNLQLLQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVTGVNSGLKFKNIRLENEIKQEFFIEQP
IAIEATGDYHAFGSFVSGIAALPRIVTLHDFEITASENKEKKSDIPQVNYNVKAKTYRYIGAADAQATETQAANANSTAT
AGGK

Nucleotide


Download         Length: 735 bp        

>NTDB_id=524486 JFY49_RS14430 WP_200223285.1 2930845..2931579(-) (pilO) [Acinetobacter sp. CS-2]
ATGAGTCTCGATGAATTTGATGAATTAAATCCAAATGAAGCTGTAGTACGTAAAAAGAAAATGACGCTGGATAAGTTTCT
TCAGCAGTTCAATACCTTAGATCCAAATAATTATGGCAGTTGGCCTTTATCCGTCAAAATCACCTGCTGGATTGCAATTG
TGCTGGCGATTGGGATTCTGGGTTATTTTTTAACAATTAAAGGTAAATTGGAAGATATTTCCAATGCTGCTGCTCAAGAG
CAAAACCTGCTTAACGAGTTTCGTGAAAAAGATTCTAAACTTCGCAATTTGCAGTTGTTGCAAGCACAGTTACAGGAAAT
GGAAGCGAATTTTAATCAGCAATTGGAACAATTGCCTAAAGAAACCGAGATTCCTGGACTGGTCGAGGATATCAACGTCA
CTGGTGTAAATTCTGGTCTGAAATTCAAAAATATCCGTTTAGAAAATGAAATAAAACAAGAGTTCTTTATTGAACAGCCA
ATTGCGATTGAGGCAACCGGTGATTATCATGCTTTTGGTTCTTTTGTAAGCGGGATTGCTGCACTGCCACGTATTGTGAC
TTTGCATGATTTTGAGATTACCGCCTCGGAAAATAAAGAGAAAAAATCTGATATTCCTCAAGTGAATTATAACGTTAAAG
CAAAAACATACCGTTATATCGGTGCTGCGGATGCTCAAGCGACAGAAACGCAAGCTGCGAATGCAAATTCAACTGCTACA
GCTGGAGGGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T7U114

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

70.732

100

0.713
  comO Acinetobacter baylyi ADP1

68.033

100

0.68