Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   JFY49_RS14435 Genome accession   NZ_CP067019
Coordinates   2931576..2932229 (-) Length   217 a.a.
NCBI ID   WP_166168585.1    Uniprot ID   -
Organism   Acinetobacter sp. CS-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2926576..2937229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFY49_RS14415 (JFY49_14415) aroK 2927556..2928104 (-) 549 WP_166168596.1 shikimate kinase AroK -
  JFY49_RS14420 (JFY49_14420) pilQ 2928141..2930252 (-) 2112 WP_200223284.1 type IV pilus secretin PilQ family protein Machinery gene
  JFY49_RS14425 (JFY49_14425) pilP 2930315..2930842 (-) 528 WP_086197205.1 pilus assembly protein PilP Machinery gene
  JFY49_RS14430 (JFY49_14430) pilO 2930845..2931579 (-) 735 WP_200223285.1 type 4a pilus biogenesis protein PilO Machinery gene
  JFY49_RS14435 (JFY49_14435) pilN 2931576..2932229 (-) 654 WP_166168585.1 PilN domain-containing protein Machinery gene
  JFY49_RS14440 (JFY49_14440) pilM 2932229..2933257 (-) 1029 WP_227609478.1 pilus assembly protein PilM Machinery gene
  JFY49_RS14445 (JFY49_14445) - 2933260..2934288 (-) 1029 WP_200223286.1 transposase -
  JFY49_RS14450 (JFY49_14450) - 2934316..2935344 (-) 1029 WP_200223267.1 transposase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 24358.61 Da        Isoelectric Point: 4.9843

>NTDB_id=524487 JFY49_RS14435 WP_166168585.1 2931576..2932229(-) (pilN) [Acinetobacter sp. CS-2]
MARINLLPWRDELREKRKKEFIAICIGAAFVGALAVTSSWFYYDHKLEDQEQANQLITSTNQNLDVQLKSLEGLEAQRNA
IIERMKLIQGLQGQRPIAVRLIDELVRVTPANLYITKFVRTGDKFTIEGRAESPNTVAEFLRNLEASAWYRNAFMNSFLA
VEEQKDKAPSSVIPRIEEGYGSFVVTADLDEIAQPAAPETQQQAPSNTANSTVEAAK

Nucleotide


Download         Length: 654 bp        

>NTDB_id=524487 JFY49_RS14435 WP_166168585.1 2931576..2932229(-) (pilN) [Acinetobacter sp. CS-2]
ATGGCAAGAATTAACTTGCTCCCTTGGCGTGATGAGCTGAGAGAGAAACGGAAAAAAGAATTTATAGCAATTTGTATTGG
GGCGGCATTCGTTGGCGCTTTAGCGGTTACGTCCTCATGGTTTTATTATGACCATAAACTTGAAGACCAGGAACAGGCCA
ATCAGCTGATTACCAGCACCAATCAAAATCTTGATGTGCAATTAAAATCTCTGGAAGGTTTGGAAGCGCAGCGTAATGCT
ATTATTGAGCGTATGAAACTGATTCAAGGCTTGCAAGGGCAACGTCCGATTGCGGTGCGTCTGATTGACGAACTGGTTCG
TGTTACGCCAGCTAATTTGTACATTACCAAATTTGTGCGTACAGGCGATAAATTCACCATTGAAGGCAGAGCTGAAAGTC
CAAATACCGTGGCAGAGTTTTTGCGTAATTTAGAAGCATCTGCCTGGTATCGCAACGCTTTCATGAATTCTTTTTTAGCA
GTTGAAGAACAAAAAGATAAAGCGCCAAGTTCCGTGATTCCGCGTATTGAAGAAGGCTATGGTTCATTTGTGGTGACTGC
CGACCTGGATGAAATCGCCCAGCCTGCTGCACCAGAAACACAACAACAAGCACCATCCAATACAGCTAATTCAACCGTGG
AGGCAGCCAAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

69.585

100

0.696
  comN Acinetobacter baylyi ADP1

71.707

94.47

0.677