Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   JFY49_RS14440 Genome accession   NZ_CP067019
Coordinates   2932229..2933257 (-) Length   342 a.a.
NCBI ID   WP_227609478.1    Uniprot ID   -
Organism   Acinetobacter sp. CS-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2933260..2935290 2932229..2933257 flank 3


Gene organization within MGE regions


Location: 2932229..2935290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFY49_RS14440 (JFY49_14440) pilM 2932229..2933257 (-) 1029 WP_227609478.1 pilus assembly protein PilM Machinery gene
  JFY49_RS14445 (JFY49_14445) - 2933260..2934288 (-) 1029 WP_200223286.1 transposase -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37835.20 Da        Isoelectric Point: 4.4320

>NTDB_id=524488 JFY49_RS14440 WP_227609478.1 2932229..2933257(-) (pilM) [Acinetobacter sp. CS-2]
MRKSYISSTSVKLLELSVKSGNRYWVESYALIPLPEGSVVEKNILNPEAVGDALERALNLANTQCTAAALAVPTSLVITK
TIEMDADMTDDEREVQIRMDAEQYIPFPLDEASLDFEVLPDRLANPNRVNVLLVATRLENVEARAEVLELANLTPKIADV
ESFALENAYKVFSDTLPIGVNTVGILDIGHTMTTLSVMQNNKVIYTREQVFGGKQLTQEIQNRYGLSFEEAGRAKKTRSL
PDDYDVEVLEPFLEAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFLQMGFSPQIDI
KKIENDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=524488 JFY49_RS14440 WP_227609478.1 2932229..2933257(-) (pilM) [Acinetobacter sp. CS-2]
GTGCGTAAGTCCTATATTAGTTCTACTTCTGTTAAATTGTTAGAACTTTCTGTTAAGAGCGGTAACAGGTATTGGGTAGA
AAGCTATGCGCTGATTCCTTTGCCTGAAGGTAGTGTTGTTGAAAAAAATATTTTAAATCCAGAAGCAGTGGGTGATGCGC
TAGAGCGAGCACTCAATCTTGCCAATACTCAATGTACAGCTGCAGCGCTCGCAGTCCCAACTTCACTGGTCATTACCAAA
ACCATTGAAATGGATGCGGATATGACGGATGACGAACGTGAAGTCCAGATTCGCATGGATGCCGAGCAATATATTCCCTT
TCCTCTGGACGAAGCCAGTCTGGATTTTGAAGTATTACCGGATCGTTTAGCCAATCCGAATCGGGTGAATGTGCTTTTAG
TTGCAACGCGTCTTGAAAATGTAGAAGCACGTGCTGAAGTGCTGGAACTGGCTAACCTGACGCCAAAAATTGCCGATGTT
GAAAGTTTTGCCCTAGAAAATGCCTATAAAGTATTTTCCGATACTTTACCAATAGGTGTGAACACGGTGGGTATTTTAGA
TATTGGTCATACCATGACGACCTTATCTGTCATGCAAAATAATAAAGTGATTTATACCAGAGAACAGGTGTTTGGCGGTA
AACAGCTGACTCAAGAAATTCAAAATCGTTATGGTCTGTCTTTTGAAGAAGCGGGCCGTGCCAAGAAAACCCGTTCATTG
CCCGATGACTATGATGTTGAAGTCTTAGAGCCATTCTTGGAAGCTGTAGTTCAGCAAGCAGCAAGATCACTGCAGTTCTT
CTTCTCGTCTTCACAGTTCAATGAGATTGACCACATTTTATTGGCAGGGGGGAATGCGAATATTCCAGGACTCGCGAAAT
TACTACAACAAAAACTGGGTTATCGCGTCACGATTGCCAACCCATTTTTGCAAATGGGGTTTTCTCCACAAATCGATATT
AAAAAAATAGAGAATGATGCTTCCTCGCTCATGGTGGCATGTGGTCTGGCATTGAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(6-341)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

86.053

98.538

0.848
  comM Acinetobacter nosocomialis M2

85.46

98.538

0.842
  comM Acinetobacter baylyi ADP1

79.822

98.538

0.787
  pilM Legionella pneumophila strain ERS1305867

41.003

99.123

0.406