Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   JFY49_RS14420 Genome accession   NZ_CP067019
Coordinates   2928141..2930252 (-) Length   703 a.a.
NCBI ID   WP_200223284.1    Uniprot ID   A0A7T7TZZ4
Organism   Acinetobacter sp. CS-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2923141..2935252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFY49_RS14405 (JFY49_14405) - 2925604..2926449 (-) 846 WP_200223282.1 hypothetical protein -
  JFY49_RS14410 (JFY49_14410) aroB 2926453..2927538 (-) 1086 WP_200223283.1 3-dehydroquinate synthase -
  JFY49_RS14415 (JFY49_14415) aroK 2927556..2928104 (-) 549 WP_166168596.1 shikimate kinase AroK -
  JFY49_RS14420 (JFY49_14420) pilQ 2928141..2930252 (-) 2112 WP_200223284.1 type IV pilus secretin PilQ family protein Machinery gene
  JFY49_RS14425 (JFY49_14425) pilP 2930315..2930842 (-) 528 WP_086197205.1 pilus assembly protein PilP Machinery gene
  JFY49_RS14430 (JFY49_14430) pilO 2930845..2931579 (-) 735 WP_200223285.1 type 4a pilus biogenesis protein PilO Machinery gene
  JFY49_RS14435 (JFY49_14435) pilN 2931576..2932229 (-) 654 WP_166168585.1 PilN domain-containing protein Machinery gene
  JFY49_RS14440 (JFY49_14440) pilM 2932229..2933257 (-) 1029 WP_227609478.1 pilus assembly protein PilM Machinery gene
  JFY49_RS14445 (JFY49_14445) - 2933260..2934288 (-) 1029 WP_200223286.1 transposase -

Sequence

Protein


Download         Length: 703 a.a.        Molecular weight: 76284.44 Da        Isoelectric Point: 6.9047

>NTDB_id=524484 JFY49_RS14420 WP_200223284.1 2928141..2930252(-) (pilQ) [Acinetobacter sp. CS-2]
MNHLFRQFSMGAVAIAIMQVANAQVSMTNIVPMQIVGQGTEIRVMFNGLPPQPQAYQLEQPSRLILDFDKAQQNLKQNSI
PVATKEATSIDVSSDAQRSRLTVNLAEAGAFTTRVEGNTFILKINSATANAFASQQVVAQKAAQGISNIGFQRGSQGEGQ
IVVDLLGSNTPVDVQQQGSKVVVRTLGNKVPAHLARRLNVNDFATPVSTVDATNNGGNGVITIQTSGSYEYMAYQTDNKL
TISLKRPEDKNPLKPKAANAYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTK
NLDKRRNGNVIWIAPVSELIKAEEEEAKALAQSVKLAPIQTEYMQLSYAKVADIQKLITQTKSSNNSNSASDNNNSSETL
LSSRGSVSADVRTNTLIVNDTAQHIDKIRKMVDLLDIPVKQVMVEARIVRASTEFSKEMGVKWGILSQGINQNNDLLVGG
SDTTLWDLKTPSDDGKYTIQRPQNLNVDLGVTSQGASRIAFGLISLSDFMLDLELSALQADGYGEVISTPKVLTADKQMA
KVSSGTQIPYQSSQGGGANAVSTTEFIDATLSLDVTPSITPDGKVQMLLNITSDTPGNPTPTGQLTINKNQINTNVLVDN
GETVVLGGIFEQETRNAQTKVPFLGDIPYVGRLFRKDVKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2112 bp        

>NTDB_id=524484 JFY49_RS14420 WP_200223284.1 2928141..2930252(-) (pilQ) [Acinetobacter sp. CS-2]
ATGAACCATTTGTTTCGTCAATTTTCTATGGGTGCTGTTGCGATTGCGATCATGCAGGTTGCAAATGCACAGGTGAGTAT
GACCAATATTGTACCTATGCAGATTGTAGGCCAAGGTACAGAAATTCGTGTCATGTTTAATGGTTTGCCGCCACAACCTC
AGGCTTACCAGCTAGAGCAGCCTTCACGTCTAATTCTTGATTTTGATAAAGCCCAACAAAATTTAAAACAAAATAGCATT
CCCGTTGCAACGAAAGAAGCAACTTCCATCGATGTGAGTTCTGATGCCCAACGCTCACGTTTAACCGTGAATTTGGCTGA
AGCGGGTGCCTTTACCACGCGTGTCGAAGGCAATACTTTTATTTTAAAAATTAATTCTGCGACTGCGAATGCATTTGCCT
CTCAGCAAGTGGTTGCCCAAAAAGCTGCGCAAGGTATTTCTAATATTGGTTTCCAGCGCGGTAGTCAGGGTGAAGGTCAA
ATTGTTGTGGATTTATTGGGGAGCAATACTCCGGTAGATGTACAACAACAAGGTAGTAAAGTCGTAGTGCGAACTCTGGG
TAATAAAGTTCCTGCACACTTGGCGCGTCGTTTAAATGTCAATGATTTCGCAACTCCAGTATCTACGGTCGATGCTACCA
ATAATGGTGGCAATGGCGTGATTACGATTCAAACTTCTGGCAGTTATGAATATATGGCTTATCAGACGGATAACAAACTG
ACTATCAGCTTAAAACGTCCTGAAGATAAAAACCCATTAAAACCTAAGGCAGCCAATGCTTATACAGGTAAAAAGATTTC
ATTAGATTTTCAGGATATTGAAGTACGTCGTGTACTGCAATTGCTGGCAGATTTCACCGGTATTAATATGGTGGCTGCGG
ATAGTGTACAAGGCAATATTACCCTGCGTTTAAAAGATGTACCATGGGATCAGGCCTTAGATATTATTTTAAAAACTAAA
AATCTGGATAAGCGCCGTAACGGAAATGTCATCTGGATTGCGCCAGTATCGGAATTAATTAAGGCGGAAGAAGAAGAAGC
TAAAGCACTGGCCCAAAGTGTAAAACTGGCACCCATACAAACAGAGTATATGCAACTCAGCTATGCAAAAGTTGCTGATA
TTCAAAAGTTGATTACCCAAACAAAATCATCGAACAATAGTAATTCTGCTAGTGACAATAATAATTCTAGTGAAACCCTA
TTAAGTTCACGTGGTTCAGTTTCGGCTGATGTACGTACCAATACCCTAATTGTTAATGATACGGCTCAACATATTGATAA
AATACGAAAAATGGTTGATTTGCTCGATATTCCGGTCAAGCAAGTCATGGTTGAAGCGCGTATTGTTCGTGCTTCCACAG
AGTTTAGTAAAGAAATGGGCGTGAAGTGGGGTATATTGTCGCAAGGGATTAACCAGAATAATGATTTGTTGGTCGGTGGT
AGCGATACAACCTTATGGGATTTAAAAACACCTAGTGATGACGGTAAATATACGATTCAACGTCCACAGAACTTAAATGT
GGATTTAGGTGTCACCAGTCAAGGTGCGAGTCGTATTGCTTTTGGTTTAATCAGTTTGTCTGATTTCATGCTGGATTTAG
AACTCTCTGCATTGCAGGCGGATGGTTATGGTGAGGTAATTTCAACGCCGAAAGTTTTAACCGCAGACAAGCAGATGGCT
AAAGTTTCATCTGGTACACAAATTCCATATCAATCATCGCAAGGTGGCGGTGCAAATGCAGTTTCAACAACTGAATTTAT
TGATGCGACTTTAAGTTTGGATGTGACCCCAAGTATAACACCTGACGGTAAAGTTCAAATGCTACTCAACATTACTAGCG
ATACTCCAGGAAACCCAACACCTACCGGTCAATTGACGATTAATAAAAATCAAATCAATACCAATGTCTTGGTTGATAAT
GGAGAAACTGTGGTACTTGGTGGTATTTTTGAACAAGAGACGCGTAATGCTCAAACCAAAGTACCATTCTTGGGTGATAT
TCCTTACGTAGGCCGTTTATTCCGTAAAGATGTGAAGTCGGATAACAAGCGAGAGCTATTGATTTTTGTTACACCACGAA
TTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(363-441)

Bacterial type II and III secretion system protein (Secretin)

(537-695)

AMIN domain (AMIN)

(39-121)

Secretin and TonB N terminus short domain (STN)

(293-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T7TZZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

74.656

100

0.771
  pilQ Acinetobacter baumannii strain A118

74.518

100

0.77
  comQ Acinetobacter baylyi ADP1

71.77

100

0.727
  pilQ Pseudomonas aeruginosa PAK

40.773

99.431

0.405
  pilQ Legionella pneumophila strain ERS1305867

38.039

95.733

0.364
  pilQ Legionella pneumophila strain Lp02

38.039

95.733

0.364