Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   JFY49_RS14425 Genome accession   NZ_CP067019
Coordinates   2930315..2930842 (-) Length   175 a.a.
NCBI ID   WP_086197205.1    Uniprot ID   -
Organism   Acinetobacter sp. CS-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2925315..2935842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFY49_RS14405 (JFY49_14405) - 2925604..2926449 (-) 846 WP_200223282.1 hypothetical protein -
  JFY49_RS14410 (JFY49_14410) aroB 2926453..2927538 (-) 1086 WP_200223283.1 3-dehydroquinate synthase -
  JFY49_RS14415 (JFY49_14415) aroK 2927556..2928104 (-) 549 WP_166168596.1 shikimate kinase AroK -
  JFY49_RS14420 (JFY49_14420) pilQ 2928141..2930252 (-) 2112 WP_200223284.1 type IV pilus secretin PilQ family protein Machinery gene
  JFY49_RS14425 (JFY49_14425) pilP 2930315..2930842 (-) 528 WP_086197205.1 pilus assembly protein PilP Machinery gene
  JFY49_RS14430 (JFY49_14430) pilO 2930845..2931579 (-) 735 WP_200223285.1 type 4a pilus biogenesis protein PilO Machinery gene
  JFY49_RS14435 (JFY49_14435) pilN 2931576..2932229 (-) 654 WP_166168585.1 PilN domain-containing protein Machinery gene
  JFY49_RS14440 (JFY49_14440) pilM 2932229..2933257 (-) 1029 WP_227609478.1 pilus assembly protein PilM Machinery gene
  JFY49_RS14445 (JFY49_14445) - 2933260..2934288 (-) 1029 WP_200223286.1 transposase -
  JFY49_RS14450 (JFY49_14450) - 2934316..2935344 (-) 1029 WP_200223267.1 transposase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19371.54 Da        Isoelectric Point: 7.1658

>NTDB_id=524485 JFY49_RS14425 WP_086197205.1 2930315..2930842(-) (pilP) [Acinetobacter sp. CS-2]
MKMQKFSLSFMLGLLLVGCDSRIDAVNEEMANIRNQPPLPIEPAPVFPPVPTFDYAAHQLKSPFLPSSLAAELKIMSGKR
VYPNLSRQLQPLESYAIESLNMKGSMRSQSGQILALIQTPDGEIERIQRGSYMGMNHGRVVNITPTQIDLVEIVPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=524485 JFY49_RS14425 WP_086197205.1 2930315..2930842(-) (pilP) [Acinetobacter sp. CS-2]
ATGAAAATGCAAAAATTCTCTCTAAGCTTCATGTTGGGTTTATTGTTGGTGGGCTGTGATTCACGTATTGATGCCGTGAA
TGAGGAAATGGCCAATATTCGCAACCAGCCGCCATTGCCGATTGAACCTGCACCGGTTTTTCCACCTGTACCGACATTTG
ATTATGCTGCACACCAGCTTAAAAGTCCTTTTTTACCGAGTTCACTGGCTGCTGAATTAAAAATTATGTCAGGAAAACGT
GTCTATCCTAATTTATCACGTCAACTGCAACCTTTAGAAAGCTATGCAATTGAATCCTTGAATATGAAGGGAAGTATGCG
TAGCCAGTCTGGACAGATCTTGGCATTGATTCAAACCCCGGATGGTGAAATTGAGCGGATACAGCGCGGCAGTTATATGG
GCATGAATCATGGTCGTGTGGTCAATATCACGCCTACACAGATTGATCTCGTGGAAATTGTTCCGGATGGGCGAGAAGGA
TACGTGGAGCGTCCAAGAAGTCTAGTATTAATTGGACCGGCGCCTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(28-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

78.286

100

0.783
  comL Acinetobacter baylyi ADP1

73.964

96.571

0.714