Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JGZ29_RS09505 Genome accession   NZ_CP066709
Coordinates   2029960..2031810 (-) Length   616 a.a.
NCBI ID   WP_322107526.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain HSP118     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2024960..2036810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ29_RS09490 (JGZ29_09490) recQ 2025108..2026889 (-) 1782 WP_015728744.1 DNA helicase RecQ -
  JGZ29_RS09495 (JGZ29_09495) - 2026899..2028776 (-) 1878 WP_199273454.1 ABC-F family ATP-binding cassette domain-containing protein -
  JGZ29_RS09500 (JGZ29_09500) - 2028888..2029703 (+) 816 WP_015728742.1 ZIP family metal transporter -
  JGZ29_RS09505 (JGZ29_09505) comA 2029960..2031810 (-) 1851 WP_322107526.1 peptide cleavage/export ABC transporter Regulator
  JGZ29_RS12115 comA 2031810..2032109 (-) 300 WP_277922754.1 cysteine peptidase family C39 domain-containing protein Regulator
  JGZ29_RS09510 (JGZ29_09510) - 2032234..2032416 (-) 183 WP_037543780.1 hypothetical protein -
  JGZ29_RS09515 (JGZ29_09515) - 2032488..2032796 (-) 309 WP_049770161.1 DUF3884 family protein -
  JGZ29_RS09520 (JGZ29_09520) - 2032868..2034157 (-) 1290 WP_051144739.1 glycosyltransferase -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 70152.18 Da        Isoelectric Point: 9.9174

>NTDB_id=521813 JGZ29_RS09505 WP_322107526.1 2029960..2031810(-) (comA) [Staphylococcus pseudintermedius strain HSP118]
MRCDKKYIYIADPDPVVNLTKMTYREFKEEWTGVTILLKPTSLYKPIKQDKVRLTSFIPLLLKEKRLIIKIIIISILVNM
INILGSYFMKSIIDFYIPQKLKTWVSMISMALIASYIIQQILSYLQKYFLILLVKTYSINILSPYIKHLFRLPITFFETR
RAGDILSRLNDANSITDALASTMLSLFLDVTIIVGISIFLYYQSTILFVLILIIIPIYAVIVFGFMNSFERKRIKSMEAN
ATLSSYLMENITGMETIKALTCEKKCYKQIKYNFSNYYEKTFLLNKLNIKQNVLKKVVQLILNVSILWVGANLVIDNQIS
IGTLLVFNSLVIYFMNPIENIMNLQLKLQIAGVANNRLNEIFTVKSEFEKNKLDIKLNQNSSKLIFSNISYGYGYEKEIL
TDINITIEHNSKVAFIGESGSGKTTLAKMMVSFFEPSKGKITLGGLDITNINKSVLRQQIIYIPQQTYIFNGTILENLLL
GVVKEVTQKDIDSAIKMAELKSFIDSLPLGLDSVLSSDFSALSGGQRQKIALARALLTNSSILIMDEATSNIDILTERKI
INNLMALNKTIIFISHNLNITQKVDKIFVLAKGKIIEEGSHEFLLKAKGYYSNLIN

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=521813 JGZ29_RS09505 WP_322107526.1 2029960..2031810(-) (comA) [Staphylococcus pseudintermedius strain HSP118]
ATTAGATGTGATAAAAAGTATATCTATATAGCTGACCCTGACCCTGTTGTTAATTTAACAAAGATGACTTATAGGGAATT
TAAAGAAGAGTGGACTGGAGTTACAATCTTATTAAAACCTACATCTTTATATAAACCTATAAAGCAAGATAAAGTTCGTT
TAACTTCTTTTATACCTTTATTATTAAAAGAAAAAAGGTTGATTATAAAAATAATAATTATTTCCATTTTAGTCAATATG
ATAAATATTTTAGGTTCATATTTTATGAAGTCAATTATTGATTTTTATATTCCGCAAAAGTTAAAAACATGGGTTAGTAT
GATTTCCATGGCTTTAATTGCTTCTTACATTATACAACAAATTCTTAGTTATTTGCAGAAATATTTTTTGATTTTATTAG
TAAAGACATATTCTATAAATATACTTTCACCATACATTAAACATTTGTTTAGATTACCTATTACTTTTTTTGAAACGAGA
AGAGCAGGAGACATACTATCAAGACTTAATGATGCAAATTCAATTACTGACGCTTTAGCTAGTACCATGCTATCATTGTT
TTTAGATGTTACAATAATAGTTGGAATATCTATCTTCCTGTATTATCAAAGTACTATTTTATTTGTATTAATATTAATTA
TCATTCCTATTTATGCCGTAATTGTTTTTGGTTTTATGAACTCTTTTGAACGGAAAAGAATAAAATCTATGGAGGCAAAT
GCTACTTTGTCTTCTTATTTGATGGAAAATATAACAGGTATGGAGACGATAAAAGCACTGACATGTGAAAAGAAATGCTA
TAAGCAGATAAAATATAATTTTTCGAATTATTACGAAAAAACATTCTTGTTAAACAAACTAAATATAAAGCAAAACGTTT
TAAAAAAGGTTGTTCAATTAATATTAAATGTATCGATTTTATGGGTAGGCGCTAACCTAGTTATAGATAATCAAATCTCA
ATTGGAACTTTGCTTGTTTTTAATTCATTAGTGATTTACTTTATGAATCCAATAGAAAATATTATGAATTTACAGCTTAA
ATTACAAATAGCAGGTGTGGCTAATAATCGATTGAATGAAATATTCACAGTTAAATCAGAATTTGAAAAGAATAAATTGG
ATATCAAATTGAACCAAAACTCAAGTAAACTTATATTTTCAAATATTTCATATGGATATGGGTACGAAAAAGAAATCCTT
ACAGATATTAATATAACAATAGAACATAATAGTAAAGTAGCCTTTATTGGAGAGTCTGGATCAGGTAAAACAACTTTGGC
GAAAATGATGGTTAGTTTTTTTGAACCTTCAAAGGGTAAAATAACACTAGGTGGATTGGACATAACAAATATCAATAAAT
CTGTTTTACGACAGCAGATTATATACATTCCACAACAAACTTATATTTTTAATGGAACTATACTTGAAAATCTTTTATTA
GGGGTAGTTAAAGAGGTTACGCAAAAGGACATAGATAGTGCTATTAAAATGGCTGAACTAAAATCCTTTATTGATAGCTT
ACCACTTGGACTTGATAGTGTATTAAGTTCTGATTTTTCTGCTTTGTCAGGAGGTCAGCGGCAGAAGATAGCTTTAGCAA
GAGCACTATTAACAAATTCTTCTATATTGATAATGGATGAAGCAACGAGTAATATTGATATACTCACGGAGAGAAAAATT
ATTAATAATTTGATGGCGTTAAATAAAACTATTATATTTATCTCCCATAATCTAAATATAACTCAAAAAGTAGATAAAAT
ATTTGTTTTAGCAAAAGGAAAAATTATAGAAGAGGGCTCACATGAATTTTTATTAAAAGCAAAAGGTTACTATTCTAACT
TAATTAATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(400-550)

ABC transporter transmembrane region (ABC_membrane)

(69-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

53.344

99.513

0.531
  comA Streptococcus mitis NCTC 12261

53.181

99.513

0.529
  comA Streptococcus pneumoniae Rx1

52.855

99.513

0.526
  comA Streptococcus pneumoniae D39

52.855

99.513

0.526
  comA Streptococcus pneumoniae R6

52.855

99.513

0.526
  comA Streptococcus pneumoniae TIGR4

52.529

99.513

0.523
  comA Streptococcus gordonii str. Challis substr. CH1

52.529

99.513

0.523
  comA/nlmT Streptococcus mutans UA159

49.427

99.188

0.49