Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JGZ29_RS12115 Genome accession   NZ_CP066709
Coordinates   2031810..2032109 (-) Length   99 a.a.
NCBI ID   WP_277922754.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain HSP118     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2026810..2037109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ29_RS09495 (JGZ29_09495) - 2026899..2028776 (-) 1878 WP_199273454.1 ABC-F family ATP-binding cassette domain-containing protein -
  JGZ29_RS09500 (JGZ29_09500) - 2028888..2029703 (+) 816 WP_015728742.1 ZIP family metal transporter -
  JGZ29_RS09505 (JGZ29_09505) comA 2029960..2031810 (-) 1851 WP_322107526.1 peptide cleavage/export ABC transporter Regulator
  JGZ29_RS12115 comA 2031810..2032109 (-) 300 WP_277922754.1 cysteine peptidase family C39 domain-containing protein Regulator
  JGZ29_RS09510 (JGZ29_09510) - 2032234..2032416 (-) 183 WP_037543780.1 hypothetical protein -
  JGZ29_RS09515 (JGZ29_09515) - 2032488..2032796 (-) 309 WP_049770161.1 DUF3884 family protein -
  JGZ29_RS09520 (JGZ29_09520) - 2032868..2034157 (-) 1290 WP_051144739.1 glycosyltransferase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11320.28 Da        Isoelectric Point: 9.4085

>NTDB_id=521819 JGZ29_RS12115 WP_277922754.1 2031810..2032109(-) (comA) [Staphylococcus pseudintermedius strain HSP118]
MKFSKRFYRAQVDSQDCGAAALAMILEFYGSHYSLDFLRRKLRTTVNGTTAYGLVQVADKLGFETVPIKADISLFEIDDV
QYPFIVRVKKITIIFTIML

Nucleotide


Download         Length: 300 bp        

>NTDB_id=521819 JGZ29_RS12115 WP_277922754.1 2031810..2032109(-) (comA) [Staphylococcus pseudintermedius strain HSP118]
ATGAAATTTTCAAAACGATTTTATCGTGCACAAGTAGATTCTCAAGATTGTGGCGCGGCAGCGCTCGCTATGATATTAGA
ATTTTACGGTTCTCACTATTCTTTGGATTTTCTGAGAAGAAAGTTAAGAACAACAGTAAATGGCACTACAGCATATGGTT
TGGTTCAGGTAGCAGATAAGTTAGGTTTTGAGACAGTTCCTATTAAAGCAGATATATCTTTGTTTGAAATTGATGATGTA
CAGTATCCTTTTATCGTTCGTGTTAAAAAAATAACAATCATTTTCACTATTATGTTGTAA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(8-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus gordonii str. Challis substr. CH1

60

90.909

0.545
  comA Streptococcus mitis SK321

56.667

90.909

0.515
  comA Streptococcus mitis NCTC 12261

56.667

90.909

0.515
  comA Streptococcus pneumoniae TIGR4

55.556

90.909

0.505
  comA Streptococcus pneumoniae Rx1

55.556

90.909

0.505
  comA Streptococcus pneumoniae D39

55.556

90.909

0.505
  comA Streptococcus pneumoniae R6

55.556

90.909

0.505
  comA/nlmT Streptococcus mutans UA159

51.111

90.909

0.465