Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   JFL59_RS00700 Genome accession   NZ_CP066566
Coordinates   128611..128946 (-) Length   111 a.a.
NCBI ID   WP_132994579.1    Uniprot ID   -
Organism   Histophilus somni strain ASc-MMNZ-VFA-078     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 123611..133946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL59_RS00680 (JFL59_00680) serA 124634..125866 (-) 1233 WP_075293546.1 phosphoglycerate dehydrogenase -
  JFL59_RS00685 (JFL59_00685) rpiA 125892..126551 (-) 660 WP_075293545.1 ribose-5-phosphate isomerase RpiA -
  JFL59_RS00690 (JFL59_00690) hemW 126647..127825 (-) 1179 WP_132994577.1 radical SAM family heme chaperone HemW -
  JFL59_RS00695 (JFL59_00695) rdgB 127825..128421 (-) 597 WP_132994578.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  JFL59_RS00700 (JFL59_00700) comE1/comEA 128611..128946 (-) 336 WP_132994579.1 ComEA family DNA-binding protein Machinery gene
  JFL59_RS00705 (JFL59_00705) - 129168..129557 (-) 390 WP_132994580.1 RidA family protein -
  JFL59_RS00710 (JFL59_00710) - 129618..130199 (-) 582 WP_011608280.1 aminotransferase class IV family protein -
  JFL59_RS00715 (JFL59_00715) - 130348..131355 (-) 1008 WP_132994581.1 aminodeoxychorismate synthase component I -
  JFL59_RS00720 (JFL59_00720) - 131412..131981 (+) 570 WP_011608282.1 anthranilate synthase component II -
  JFL59_RS00725 (JFL59_00725) - 132134..132613 (+) 480 WP_011608283.1 Dps family protein -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12169.16 Da        Isoelectric Point: 10.2041

>NTDB_id=520995 JFL59_RS00700 WP_132994579.1 128611..128946(-) (comE1/comEA) [Histophilus somni strain ASc-MMNZ-VFA-078]
MKKITSFFKSLLMLSVALGAFNAFAETPTQPPSSAQATQQVEQVIISDKLNINTATAEEIKHALIGIGSKKAEAIVQYRE
KFGKFTAAEQLLEVKGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 336 bp        

>NTDB_id=520995 JFL59_RS00700 WP_132994579.1 128611..128946(-) (comE1/comEA) [Histophilus somni strain ASc-MMNZ-VFA-078]
ATGAAAAAAATAACCTCATTTTTCAAATCATTATTGATGTTAAGTGTTGCTTTGGGTGCTTTTAATGCATTTGCAGAAAC
ACCAACTCAACCACCTAGTTCAGCCCAAGCAACACAACAAGTTGAACAGGTCATTATTAGCGATAAATTGAACATCAATA
CTGCAACAGCGGAAGAAATTAAACACGCTTTAATAGGAATTGGAAGCAAAAAAGCCGAGGCAATTGTTCAATATCGTGAA
AAATTTGGTAAATTTACCGCGGCTGAACAGTTACTTGAAGTCAAGGGGATTGGCAAAGCAACACTAGAAAAGAATAGAGA
TCGTATCATTTTCTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(48-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

59.459

100

0.595
  comEA/comE1 Glaesserella parasuis strain SC1401

52.586

100

0.55
  comEA Vibrio cholerae C6706

44.954

98.198

0.441
  comEA Vibrio cholerae strain A1552

44.954

98.198

0.441
  comEA Vibrio campbellii strain DS40M4

43.269

93.694

0.405
  comEA Vibrio parahaemolyticus RIMD 2210633

50.617

72.973

0.369