Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JFL55_RS06870 Genome accession   NZ_CP066564
Coordinates   1490428..1490880 (-) Length   150 a.a.
NCBI ID   WP_198974095.1    Uniprot ID   -
Organism   Histophilus somni strain ASc-MMNZ-VFA-69     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1485428..1495880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL55_RS06845 (JFL55_06845) - 1485518..1485697 (+) 180 WP_010787307.1 hypothetical protein -
  JFL55_RS06850 (JFL55_06850) - 1485746..1486264 (+) 519 WP_198974092.1 hypothetical protein -
  JFL55_RS06855 (JFL55_06855) tetR(H) 1486267..1486890 (-) 624 WP_006248868.1 tetracycline resistance transcriptional repressor TetR(H) -
  JFL55_RS06860 (JFL55_06860) tet(H) 1486982..1488184 (+) 1203 WP_198974093.1 tetracycline efflux MFS transporter Tet(H) -
  JFL55_RS06865 (JFL55_06865) - 1488280..1489590 (-) 1311 WP_198974094.1 ISL3 family transposase -
  JFL55_RS06870 (JFL55_06870) ssb 1490428..1490880 (-) 453 WP_198974095.1 single-stranded DNA-binding protein Machinery gene
  JFL55_RS06875 (JFL55_06875) - 1491238..1491723 (-) 486 WP_198974096.1 DUF3158 family protein -
  JFL55_RS06880 (JFL55_06880) - 1491732..1492490 (-) 759 WP_006248855.1 PFL_4669 family integrating conjugative element protein -
  JFL55_RS06885 (JFL55_06885) - 1492669..1493859 (-) 1191 WP_198974097.1 STY4528 family pathogenicity island replication protein -
  JFL55_RS06890 (JFL55_06890) - 1494018..1494575 (-) 558 WP_006248853.1 DUF2857 domain-containing protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17153.99 Da        Isoelectric Point: 5.2564

>NTDB_id=520953 JFL55_RS06870 WP_198974095.1 1490428..1490880(-) (ssb) [Histophilus somni strain ASc-MMNZ-VFA-69]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWNDKNTGERRELTEWHRIVFYRRQAEVCGQYLRKGSKVYIEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=520953 JFL55_RS06870 WP_198974095.1 1490428..1490880(-) (ssb) [Histophilus somni strain ASc-MMNZ-VFA-69]
ATGGCTGGCATCAATAAAGTCATTATTGTAGGCAATCTAGGCAATGATCCTGAAATGCGGACTATGCCTAATGGCGAAGC
AGTTGCAAATATCAGTGTAGCAACGTCAGAGTCTTGGAATGATAAAAATACCGGAGAACGCCGAGAACTTACGGAATGGC
ACAGAATTGTATTCTATCGCCGTCAGGCAGAAGTATGTGGTCAATATCTACGGAAAGGTTCAAAAGTATATATAGAAGGT
CGTTTACGTACCCGTAAATGGCAAGACCAAAACGGGCAAGATCGCTATACCACTGAAATTCAAGGTGATGTACTACAGAT
GCTTGATAGTCGTAATGCTACAAATAGCGTAGATGGACAACAATCTAACTATCAAGCTATGAGCCAATCTCCAAAAGCAA
CACATCCACAAGATTTACCAATGGATAACTTCGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

66.111

100

0.793
  ssb Vibrio cholerae strain A1552

51.724

100

0.6
  ssb Neisseria gonorrhoeae MS11

46.243

100

0.533
  ssb Neisseria meningitidis MC58

45.665

100

0.527
  ssbA Bacillus subtilis subsp. subtilis str. 168

31.818

100

0.373
  ssb Latilactobacillus sakei subsp. sakei 23K

31.977

100

0.367