Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   YB51_RS05605 Genome accession   NC_022516
Coordinates   1138379..1139050 (-) Length   223 a.a.
NCBI ID   WP_009909965.1    Uniprot ID   -
Organism   Streptococcus suis YB51     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1133379..1144050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YB51_RS05585 (YB51_5500) coaA 1133965..1134885 (+) 921 WP_002935283.1 type I pantothenate kinase -
  YB51_RS05590 (YB51_5505) rpsT 1134944..1135192 (+) 249 WP_012027069.1 30S ribosomal protein S20 -
  YB51_RS05595 (YB51_5510) - 1135454..1136683 (-) 1230 WP_002935288.1 transglutaminase domain-containing protein -
  YB51_RS05600 (YB51_5520) ciaH 1137007..1138386 (-) 1380 WP_002935290.1 sensor histidine kinase Regulator
  YB51_RS05605 (YB51_5525) ciaR 1138379..1139050 (-) 672 WP_009909965.1 response regulator transcription factor Regulator
  YB51_RS05610 (YB51_5530) - 1139244..1139624 (-) 381 WP_002935294.1 hypothetical protein -
  YB51_RS05615 (YB51_5535) - 1140009..1141211 (+) 1203 WP_002935295.1 IS110-like element ISSsu7 family transposase -
  YB51_RS05620 phoU 1141413..1142070 (-) 658 Protein_1071 phosphate signaling complex protein PhoU -
  YB51_RS05625 (YB51_5550) pstB 1142099..1142857 (-) 759 WP_002937614.1 phosphate ABC transporter ATP-binding protein PstB -
  YB51_RS05630 (YB51_5555) pstB 1142869..1143672 (-) 804 WP_002937615.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25290.00 Da        Isoelectric Point: 4.2183

>NTDB_id=52026 YB51_RS05605 WP_009909965.1 1138379..1139050(-) (ciaR) [Streptococcus suis YB51]
MIKILLVEDDLSLSNSVFDFLDDFADVMQVFDGEEGVYEAETGVYDLILLDLMLPEKDGFQVLKELREKGVTTPVLITTA
KESLEDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLTFGDVTVDLSTNMTMVNGEEVELLGKEFDLLVY
FLQNQNVILPKTQIFDRIWGFDSDTTISVVEVYVSKIRKKLKGTTFGENLQTLRSVGYILKNA

Nucleotide


Download         Length: 672 bp        

>NTDB_id=52026 YB51_RS05605 WP_009909965.1 1138379..1139050(-) (ciaR) [Streptococcus suis YB51]
ATGATTAAAATATTGTTAGTGGAAGATGATTTAAGTCTATCAAATTCTGTTTTCGATTTCTTAGATGATTTTGCGGATGT
TATGCAGGTTTTTGATGGTGAAGAGGGCGTTTATGAGGCGGAAACAGGCGTTTATGATTTGATTCTTTTGGATTTGATGT
TGCCTGAAAAAGATGGCTTCCAAGTCTTGAAAGAATTACGTGAAAAAGGTGTTACGACACCTGTTCTGATTACAACAGCC
AAGGAAAGTCTAGAGGATAAAGGCCATGGTTTTGAATTGGGGGCTGATGACTATTTGACAAAACCGTTTTATTTAGAAGA
ATTGAAGATGCGAATTCAAGCTCTATTAAAACGAGCGGGTAAGTTTAATGAAAACACACTAACCTTTGGAGATGTGACAG
TTGACCTATCTACAAATATGACGATGGTAAATGGCGAAGAAGTTGAACTGCTAGGAAAAGAATTTGATCTACTAGTTTAT
TTCTTGCAAAATCAAAATGTTATTTTGCCAAAAACACAAATTTTTGACCGTATTTGGGGCTTTGACAGTGATACTACAAT
TTCAGTAGTAGAAGTATATGTTTCTAAAATTAGGAAAAAGTTGAAAGGAACGACCTTTGGGGAAAATCTTCAAACCCTGC
GTAGTGTCGGATACATTCTAAAAAATGCCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

90.135

100

0.901
  ciaR Streptococcus pneumoniae Rx1

88.341

100

0.883
  ciaR Streptococcus pneumoniae D39

88.341

100

0.883
  ciaR Streptococcus pneumoniae R6

88.341

100

0.883
  ciaR Streptococcus pneumoniae TIGR4

88.341

100

0.883
  covR Lactococcus lactis subsp. lactis strain DGCC12653

38.496

100

0.39
  vicR Streptococcus mutans UA159

35.47

100

0.372
  covR Streptococcus salivarius strain HSISS4

35.841

100

0.363

Multiple sequence alignment