Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   SCIM_RS07345 Genome accession   NC_018073
Coordinates   1506528..1508024 (-) Length   498 a.a.
NCBI ID   WP_003074402.1    Uniprot ID   T1ZGK9
Organism   Streptococcus intermedius JTH08     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1501528..1513024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS07320 (SCIM_1319) - 1501596..1502561 (+) 966 WP_003075902.1 LacI family DNA-binding transcriptional regulator -
  SCIM_RS07325 (SCIM_1320) - 1502647..1503465 (-) 819 WP_003076013.1 Cof-type HAD-IIB family hydrolase -
  SCIM_RS07330 (SCIM_1321) amiF 1503592..1504515 (-) 924 WP_003074407.1 ATP-binding cassette domain-containing protein Regulator
  SCIM_RS07335 (SCIM_1322) amiE 1504526..1505593 (-) 1068 WP_003074405.1 ABC transporter ATP-binding protein Regulator
  SCIM_RS07340 (SCIM_1323) amiD 1505602..1506528 (-) 927 WP_003075765.1 oligopeptide ABC transporter permease OppC Regulator
  SCIM_RS07345 (SCIM_1324) amiC 1506528..1508024 (-) 1497 WP_003074402.1 ABC transporter permease Regulator
  SCIM_RS07350 (SCIM_1325) amiA3 1508398..1510377 (-) 1980 WP_003076037.1 peptide ABC transporter substrate-binding protein Regulator
  SCIM_RS07355 (SCIM_1326) amiA3 1510574..1512550 (-) 1977 WP_003076197.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55912.09 Da        Isoelectric Point: 10.0131

>NTDB_id=51888 SCIM_RS07345 WP_003074402.1 1506528..1508024(-) (amiC) [Streptococcus intermedius JTH08]
MKKYIFMRILRSLVSIFMVTTLTYTIIYTMVPRKLIFKQDPNYNKIATTPDKKTNYENTIFERMGYIDYYDTKELQEKAS
KENPSVTVEPTNANKKIYEAYIKKLGRGWKLQQFKESKQFYATREVPVYERVLGFYGNLIQIDHTGAVKDASNPNLKRYL
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFIHQNFVRLNLGTSYPTYANLPVLQVISQGQGQTQTSEVQFPTGKKTSSV
NIYTRTYKSPKHADVRDVANYGKDDPYTATESNYQYPSMLVSSSIVGLIGLALSYLIAVPLGSYMARFKNTLFDSISTGA
LTFLMSLPTIALVYIIRLIGSAIGLPDSFPILGAGDWRSYVLPAVILGLLSAPWTAVWIRRYMIDLQSQDFVRFARAKGL
SEQEISNKHIFKNAMVPLVSSIPGAIIGVITGATLTETIFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCLSIFALLLGD
ILMTMLDPRIKLTSKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=51888 SCIM_RS07345 WP_003074402.1 1506528..1508024(-) (amiC) [Streptococcus intermedius JTH08]
ATGAAGAAATATATTTTTATGCGTATCTTACGCTCTTTAGTATCTATTTTCATGGTAACAACATTGACTTACACCATTAT
CTATACTATGGTGCCAAGAAAGTTGATTTTTAAACAGGATCCAAACTATAATAAAATAGCTACAACTCCTGATAAAAAGA
CTAATTATGAAAATACAATTTTTGAGCGTATGGGTTACATTGACTACTATGATACGAAGGAATTACAAGAAAAAGCTAGT
AAAGAGAATCCTTCTGTAACAGTAGAACCTACTAATGCAAATAAAAAAATCTATGAAGCTTACATCAAAAAGTTGGGGCG
TGGTTGGAAATTGCAGCAATTCAAAGAAAGTAAGCAATTTTATGCAACTCGAGAGGTTCCGGTTTATGAACGCGTTCTTG
GTTTCTATGGTAATTTGATTCAAATTGATCATACAGGGGCTGTGAAAGATGCTTCTAATCCAAACTTGAAGCGTTATCTT
CGTATTGAAAATGATCCTGCTATTGGTTGGTCTGTTGTTGGTTCTGGAACGAAACATAAATACTTGTTATATTTCAACAG
TCAATTTCCATTTATCCATCAAAATTTTGTAAGATTAAATTTGGGAACATCTTATCCAACCTATGCAAATCTCCCTGTTC
TACAAGTTATTTCACAAGGGCAAGGTCAAACGCAGACTTCAGAAGTTCAATTTCCAACAGGAAAGAAAACATCGTCTGTT
AATATTTACACGCGTACCTATAAGTCTCCAAAACACGCTGATGTGCGAGATGTTGCTAATTACGGGAAAGACGATCCTTA
TACAGCAACAGAAAGCAACTATCAGTATCCATCAATGCTTGTAAGTTCTTCAATTGTTGGTTTGATTGGTCTAGCATTGT
CTTACTTAATCGCTGTGCCGTTAGGCTCTTATATGGCTCGTTTTAAGAATACATTGTTTGACAGTATTTCAACTGGTGCT
TTGACTTTCTTAATGTCGCTGCCAACTATTGCTTTGGTTTATATCATTCGCTTGATTGGTTCAGCAATAGGATTGCCAGA
CTCCTTCCCTATTTTAGGTGCAGGAGATTGGCGTTCTTATGTGCTGCCAGCAGTCATTCTTGGACTGTTGAGTGCGCCTT
GGACTGCTGTTTGGATTCGCCGTTATATGATTGACCTGCAATCACAAGACTTTGTTCGTTTTGCTCGAGCAAAAGGTCTC
TCTGAACAAGAAATTTCAAATAAACATATTTTTAAAAACGCTATGGTACCACTTGTATCCAGCATACCTGGTGCTATTAT
TGGAGTTATCACAGGTGCAACCTTGACTGAAACAATTTTTGCTTTCCCTGGAATGGGTAAAATGCTGATTGACTCTGTCA
AAGCATCTAATAATTCTATGGTCGTTGGTCTTGTATTTATCTTTACATGTCTATCTATCTTTGCTCTTCTATTGGGTGAT
ATTCTGATGACCATGCTTGACCCACGTATTAAATTAACATCAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZGK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

80.522

100

0.805
  amiC Streptococcus thermophilus LMG 18311

79.518

100

0.795
  amiC Streptococcus thermophilus LMD-9

79.317

100

0.793

Multiple sequence alignment