Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SCIM_RS07340 Genome accession   NC_018073
Coordinates   1505602..1506528 (-) Length   308 a.a.
NCBI ID   WP_003075765.1    Uniprot ID   -
Organism   Streptococcus intermedius JTH08     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1500602..1511528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS07320 (SCIM_1319) - 1501596..1502561 (+) 966 WP_003075902.1 LacI family DNA-binding transcriptional regulator -
  SCIM_RS07325 (SCIM_1320) - 1502647..1503465 (-) 819 WP_003076013.1 Cof-type HAD-IIB family hydrolase -
  SCIM_RS07330 (SCIM_1321) amiF 1503592..1504515 (-) 924 WP_003074407.1 ATP-binding cassette domain-containing protein Regulator
  SCIM_RS07335 (SCIM_1322) amiE 1504526..1505593 (-) 1068 WP_003074405.1 ABC transporter ATP-binding protein Regulator
  SCIM_RS07340 (SCIM_1323) amiD 1505602..1506528 (-) 927 WP_003075765.1 oligopeptide ABC transporter permease OppC Regulator
  SCIM_RS07345 (SCIM_1324) amiC 1506528..1508024 (-) 1497 WP_003074402.1 ABC transporter permease Regulator
  SCIM_RS07350 (SCIM_1325) amiA3 1508398..1510377 (-) 1980 WP_003076037.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34485.55 Da        Isoelectric Point: 9.8589

>NTDB_id=51887 SCIM_RS07340 WP_003075765.1 1505602..1506528(-) (amiD) [Streptococcus intermedius JTH08]
MATIDKSKFTFVKRDDFASEIIDAPAYSYWKSVMRQFLRKKSTIAMLGILVAIVLMSFIYPIFSNFDFNDVSKVNDFSAR
YIKPNAQYWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGIVIGGIWGISKTVDRVMIEIYNIISNIPPLLIVIV
LTYSIGAGFWNLIFAMTITGWIGIAYNIRIQILRYRDLEYNLASRTLGTPPLKIIVKNIMPQLVSVIVTTASQLLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=51887 SCIM_RS07340 WP_003075765.1 1505602..1506528(-) (amiD) [Streptococcus intermedius JTH08]
ATGGCTACAATTGATAAAAGTAAGTTCACATTTGTAAAACGCGATGATTTTGCCTCTGAAATAATTGATGCACCAGCTTA
TTCTTACTGGAAATCTGTTATGCGTCAATTCTTAAGGAAAAAATCAACAATTGCTATGTTGGGTATTCTTGTTGCAATTG
TTTTGATGAGTTTCATCTATCCGATTTTTTCAAATTTCGATTTTAATGATGTAAGTAAAGTAAATGATTTTAGTGCTCGT
TATATCAAACCGAATGCTCAATATTGGTTTGGTACAGATAGTAACGGGAAATCCCTCTTTGACGGAGTGTGGTTTGGAGC
ACGTAACTCTATTCTTATTTCAGTTATTGCAACCGTGATTAACCTTGTGATTGGTATTGTTATTGGTGGTATCTGGGGAA
TTTCAAAAACTGTCGATCGTGTGATGATTGAGATTTATAATATTATTTCTAACATCCCACCGCTTTTGATTGTCATTGTC
TTGACGTACTCAATCGGTGCAGGTTTCTGGAATTTGATTTTTGCCATGACGATTACTGGTTGGATTGGGATTGCTTACAA
CATTCGTATCCAAATTCTACGTTATCGTGATTTAGAATACAACCTCGCCAGTCGTACCTTGGGAACGCCACCGCTTAAAA
TTATTGTGAAAAATATTATGCCACAATTGGTTTCTGTCATTGTGACTACTGCTTCACAATTACTACCAAGTTTCATTTCA
TACGAAGCCTTTCTATCTTTCTTTGGTTTGGGGCTTCCTGTGACGGTGCCAAGTTTAGGGCGTTTGATTTCAGATTATTC
ACAAAACGTTACAACAAATGCATATCTTTTCTGGATTCCATTGACAACTTTAATCTTGGTTTCCCTTTCATTATTCGTTG
TCGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

85.714

100

0.857
  amiD Streptococcus thermophilus LMG 18311

83.117

100

0.831
  amiD Streptococcus thermophilus LMD-9

83.117

100

0.831

Multiple sequence alignment